Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04290 and BWI76_RS04295 are separated by 27 nucleotides BWI76_RS04295 and BWI76_RS04300 are separated by 385 nucleotides BWI76_RS04300 and BWI76_RS04305 are separated by 87 nucleotides
BWI76_RS04290: BWI76_RS04290 - hypothetical protein, at 883,512 to 884,261
_RS04290
BWI76_RS04295: BWI76_RS04295 - hypothetical protein, at 884,289 to 884,693
_RS04295
BWI76_RS04300: BWI76_RS04300 - molecular chaperone DnaK, at 885,079 to 886,995
_RS04300
BWI76_RS04305: BWI76_RS04305 - molecular chaperone DnaJ, at 887,083 to 888,219
_RS04305
Position (kb) 885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 884.112 kb on - strand, within BWI76_RS04290 at 884.112 kb on - strand, within BWI76_RS04290 at 884.127 kb on + strand, within BWI76_RS04290 at 884.133 kb on - strand, within BWI76_RS04290 at 884.135 kb on - strand, within BWI76_RS04290 at 884.138 kb on + strand, within BWI76_RS04290 at 884.138 kb on + strand, within BWI76_RS04290 at 884.140 kb on + strand, within BWI76_RS04290 at 884.140 kb on + strand, within BWI76_RS04290 at 884.140 kb on + strand, within BWI76_RS04290 at 884.140 kb on + strand, within BWI76_RS04290 at 884.146 kb on - strand, within BWI76_RS04290 at 884.148 kb on - strand, within BWI76_RS04290 at 884.148 kb on - strand, within BWI76_RS04290 at 884.148 kb on - strand, within BWI76_RS04290 at 884.148 kb on - strand, within BWI76_RS04290 at 884.148 kb on - strand, within BWI76_RS04290 at 884.151 kb on + strand, within BWI76_RS04290 at 884.185 kb on - strand, within BWI76_RS04290 at 884.227 kb on - strand at 884.227 kb on - strand at 884.231 kb on + strand at 884.239 kb on - strand at 884.239 kb on - strand at 884.239 kb on - strand at 884.286 kb on + strand at 884.294 kb on - strand at 884.321 kb on + strand at 884.321 kb on + strand at 884.321 kb on + strand at 884.321 kb on + strand at 884.321 kb on + strand at 884.321 kb on + strand at 884.321 kb on + strand at 884.321 kb on + strand at 884.323 kb on + strand at 884.329 kb on - strand at 884.329 kb on - strand at 884.329 kb on - strand at 884.329 kb on - strand at 884.329 kb on - strand at 884.329 kb on - strand at 884.329 kb on - strand at 884.329 kb on - strand at 884.329 kb on - strand at 884.329 kb on - strand at 884.330 kb on + strand, within BWI76_RS04295 at 884.330 kb on + strand, within BWI76_RS04295 at 884.330 kb on + strand, within BWI76_RS04295 at 884.330 kb on + strand, within BWI76_RS04295 at 884.330 kb on + strand, within BWI76_RS04295 at 884.330 kb on + strand, within BWI76_RS04295 at 884.330 kb on + strand, within BWI76_RS04295 at 884.330 kb on + strand, within BWI76_RS04295 at 884.330 kb on + strand, within BWI76_RS04295 at 884.331 kb on - strand at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.338 kb on - strand, within BWI76_RS04295 at 884.370 kb on + strand at 884.380 kb on + strand, within BWI76_RS04295 at 884.382 kb on - strand, within BWI76_RS04295 at 884.395 kb on + strand, within BWI76_RS04295 at 884.397 kb on - strand, within BWI76_RS04295 at 884.397 kb on - strand, within BWI76_RS04295 at 884.397 kb on - strand, within BWI76_RS04295 at 884.397 kb on - strand, within BWI76_RS04295 at 884.419 kb on - strand, within BWI76_RS04295 at 884.423 kb on + strand, within BWI76_RS04295 at 884.431 kb on + strand, within BWI76_RS04295 at 884.431 kb on - strand, within BWI76_RS04295 at 884.431 kb on - strand, within BWI76_RS04295 at 884.431 kb on - strand, within BWI76_RS04295 at 884.443 kb on + strand, within BWI76_RS04295 at 884.443 kb on + strand, within BWI76_RS04295 at 884.443 kb on + strand, within BWI76_RS04295 at 884.447 kb on + strand, within BWI76_RS04295 at 884.447 kb on + strand, within BWI76_RS04295 at 884.447 kb on + strand, within BWI76_RS04295 at 884.448 kb on + strand, within BWI76_RS04295 at 884.448 kb on + strand, within BWI76_RS04295 at 884.453 kb on + strand, within BWI76_RS04295 at 884.455 kb on - strand, within BWI76_RS04295 at 884.455 kb on - strand, within BWI76_RS04295 at 884.455 kb on - strand, within BWI76_RS04295 at 884.455 kb on - strand, within BWI76_RS04295 at 884.455 kb on - strand, within BWI76_RS04295 at 884.455 kb on - strand, within BWI76_RS04295 at 884.456 kb on - strand, within BWI76_RS04295 at 884.456 kb on - strand, within BWI76_RS04295 at 884.456 kb on - strand, within BWI76_RS04295 at 884.456 kb on - strand, within BWI76_RS04295 at 884.463 kb on + strand, within BWI76_RS04295 at 884.463 kb on + strand, within BWI76_RS04295 at 884.466 kb on - strand, within BWI76_RS04295 at 884.466 kb on - strand, within BWI76_RS04295 at 884.471 kb on - strand, within BWI76_RS04295 at 884.475 kb on + strand, within BWI76_RS04295 at 884.476 kb on + strand, within BWI76_RS04295 at 884.479 kb on - strand, within BWI76_RS04295 at 884.526 kb on - strand at 884.526 kb on - strand, within BWI76_RS04295 at 884.526 kb on - strand, within BWI76_RS04295 at 884.558 kb on + strand, within BWI76_RS04295 at 884.558 kb on + strand, within BWI76_RS04295 at 884.558 kb on + strand, within BWI76_RS04295 at 884.559 kb on + strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.566 kb on - strand, within BWI76_RS04295 at 884.572 kb on - strand, within BWI76_RS04295 at 884.572 kb on - strand, within BWI76_RS04295 at 884.572 kb on - strand, within BWI76_RS04295 at 884.603 kb on - strand, within BWI76_RS04295 at 884.603 kb on - strand, within BWI76_RS04295 at 884.612 kb on - strand, within BWI76_RS04295 at 884.630 kb on + strand, within BWI76_RS04295 at 884.635 kb on + strand, within BWI76_RS04295 at 884.640 kb on + strand, within BWI76_RS04295 at 884.640 kb on + strand, within BWI76_RS04295 at 884.640 kb on + strand, within BWI76_RS04295 at 884.640 kb on + strand, within BWI76_RS04295 at 884.640 kb on + strand, within BWI76_RS04295 at 884.640 kb on + strand, within BWI76_RS04295 at 884.640 kb on + strand, within BWI76_RS04295 at 884.648 kb on - strand, within BWI76_RS04295 at 884.648 kb on - strand, within BWI76_RS04295 at 884.648 kb on - strand, within BWI76_RS04295 at 884.648 kb on - strand, within BWI76_RS04295 at 884.652 kb on + strand, within BWI76_RS04295 at 884.653 kb on + strand at 884.658 kb on - strand at 884.658 kb on - strand at 884.829 kb on + strand at 884.837 kb on - strand at 884.856 kb on + strand at 884.863 kb on + strand at 884.863 kb on + strand at 884.868 kb on + strand at 884.876 kb on + strand at 884.876 kb on - strand at 884.879 kb on + strand at 884.879 kb on + strand at 884.881 kb on + strand at 884.881 kb on + strand at 884.881 kb on + strand at 884.881 kb on + strand at 884.881 kb on + strand at 884.881 kb on + strand at 884.881 kb on + strand at 884.881 kb on + strand at 884.881 kb on + strand at 884.881 kb on + strand at 884.887 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.889 kb on - strand at 884.899 kb on - strand at 884.936 kb on + strand at 884.936 kb on + strand at 884.944 kb on - strand at 884.944 kb on - strand at 884.948 kb on + strand at 884.954 kb on - strand at 884.957 kb on - strand at 884.972 kb on + strand at 884.994 kb on + strand at 886.916 kb on + strand at 887.035 kb on + strand at 887.041 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 884,112 - BWI76_RS04290 0.80 -0.1 884,112 - BWI76_RS04290 0.80 -0.5 884,127 + BWI76_RS04290 0.82 -1.1 884,133 - BWI76_RS04290 0.83 +1.9 884,135 - BWI76_RS04290 0.83 +1.1 884,138 + BWI76_RS04290 0.83 -0.1 884,138 + BWI76_RS04290 0.83 +0.5 884,140 + BWI76_RS04290 0.84 -0.2 884,140 + BWI76_RS04290 0.84 +1.1 884,140 + BWI76_RS04290 0.84 -1.2 884,140 + BWI76_RS04290 0.84 +1.1 884,146 - BWI76_RS04290 0.85 -1.2 884,148 - BWI76_RS04290 0.85 -0.9 884,148 - BWI76_RS04290 0.85 -0.5 884,148 - BWI76_RS04290 0.85 +0.0 884,148 - BWI76_RS04290 0.85 +0.1 884,148 - BWI76_RS04290 0.85 +0.2 884,151 + BWI76_RS04290 0.85 -0.6 884,185 - BWI76_RS04290 0.90 -0.1 884,227 - -0.4 884,227 - +0.2 884,231 + +1.3 884,239 - +0.5 884,239 - -2.1 884,239 - -0.9 884,286 + -1.6 884,294 - +0.6 884,321 + +1.7 884,321 + +0.1 884,321 + +0.0 884,321 + -0.5 884,321 + -0.8 884,321 + +0.2 884,321 + +0.6 884,321 + -2.9 884,323 + +0.4 884,329 - +1.1 884,329 - -0.4 884,329 - +0.2 884,329 - +0.2 884,329 - +0.0 884,329 - -0.4 884,329 - +0.3 884,329 - +1.6 884,329 - +0.9 884,329 - +0.5 884,330 + BWI76_RS04295 0.10 +0.1 884,330 + BWI76_RS04295 0.10 -0.9 884,330 + BWI76_RS04295 0.10 -0.4 884,330 + BWI76_RS04295 0.10 +0.9 884,330 + BWI76_RS04295 0.10 +0.7 884,330 + BWI76_RS04295 0.10 +0.1 884,330 + BWI76_RS04295 0.10 +0.5 884,330 + BWI76_RS04295 0.10 +0.7 884,330 + BWI76_RS04295 0.10 +0.5 884,331 - -2.3 884,338 - BWI76_RS04295 0.12 +0.2 884,338 - BWI76_RS04295 0.12 +0.1 884,338 - BWI76_RS04295 0.12 -0.2 884,338 - BWI76_RS04295 0.12 -0.0 884,338 - BWI76_RS04295 0.12 -0.3 884,338 - BWI76_RS04295 0.12 +0.0 884,338 - BWI76_RS04295 0.12 +0.9 884,338 - BWI76_RS04295 0.12 -1.8 884,338 - BWI76_RS04295 0.12 -0.8 884,338 - BWI76_RS04295 0.12 -0.2 884,338 - BWI76_RS04295 0.12 -1.1 884,338 - BWI76_RS04295 0.12 -0.0 884,370 + +1.1 884,380 + BWI76_RS04295 0.22 -0.1 884,382 - BWI76_RS04295 0.23 +0.3 884,395 + BWI76_RS04295 0.26 -1.6 884,397 - BWI76_RS04295 0.27 -0.5 884,397 - BWI76_RS04295 0.27 +0.4 884,397 - BWI76_RS04295 0.27 +0.0 884,397 - BWI76_RS04295 0.27 -0.8 884,419 - BWI76_RS04295 0.32 +0.5 884,423 + BWI76_RS04295 0.33 -0.1 884,431 + BWI76_RS04295 0.35 -1.3 884,431 - BWI76_RS04295 0.35 -2.3 884,431 - BWI76_RS04295 0.35 +0.4 884,431 - BWI76_RS04295 0.35 -0.0 884,443 + BWI76_RS04295 0.38 -0.1 884,443 + BWI76_RS04295 0.38 -0.4 884,443 + BWI76_RS04295 0.38 -0.2 884,447 + BWI76_RS04295 0.39 -0.3 884,447 + BWI76_RS04295 0.39 -1.1 884,447 + BWI76_RS04295 0.39 +0.6 884,448 + BWI76_RS04295 0.39 +0.6 884,448 + BWI76_RS04295 0.39 -0.0 884,453 + BWI76_RS04295 0.40 -0.1 884,455 - BWI76_RS04295 0.41 +0.1 884,455 - BWI76_RS04295 0.41 -0.1 884,455 - BWI76_RS04295 0.41 +0.4 884,455 - BWI76_RS04295 0.41 +0.1 884,455 - BWI76_RS04295 0.41 -0.6 884,455 - BWI76_RS04295 0.41 +0.4 884,456 - BWI76_RS04295 0.41 -1.1 884,456 - BWI76_RS04295 0.41 +0.4 884,456 - BWI76_RS04295 0.41 -0.2 884,456 - BWI76_RS04295 0.41 -0.4 884,463 + BWI76_RS04295 0.43 -1.0 884,463 + BWI76_RS04295 0.43 -1.2 884,466 - BWI76_RS04295 0.44 -0.2 884,466 - BWI76_RS04295 0.44 -1.5 884,471 - BWI76_RS04295 0.45 -0.8 884,475 + BWI76_RS04295 0.46 -1.9 884,476 + BWI76_RS04295 0.46 -0.2 884,479 - BWI76_RS04295 0.47 +0.4 884,526 - +1.1 884,526 - BWI76_RS04295 0.59 +0.7 884,526 - BWI76_RS04295 0.59 +1.6 884,558 + BWI76_RS04295 0.66 -0.9 884,558 + BWI76_RS04295 0.66 -0.5 884,558 + BWI76_RS04295 0.66 -0.4 884,559 + BWI76_RS04295 0.67 -1.1 884,566 - BWI76_RS04295 0.68 -0.5 884,566 - BWI76_RS04295 0.68 -1.0 884,566 - BWI76_RS04295 0.68 +1.1 884,566 - BWI76_RS04295 0.68 -0.3 884,566 - BWI76_RS04295 0.68 -0.5 884,566 - BWI76_RS04295 0.68 +0.0 884,566 - BWI76_RS04295 0.68 +0.5 884,566 - BWI76_RS04295 0.68 -0.4 884,566 - BWI76_RS04295 0.68 +0.1 884,566 - BWI76_RS04295 0.68 -0.9 884,566 - BWI76_RS04295 0.68 -2.1 884,566 - BWI76_RS04295 0.68 +1.0 884,566 - BWI76_RS04295 0.68 -0.4 884,572 - BWI76_RS04295 0.70 -0.5 884,572 - BWI76_RS04295 0.70 +0.0 884,572 - BWI76_RS04295 0.70 -1.5 884,603 - BWI76_RS04295 0.78 -0.3 884,603 - BWI76_RS04295 0.78 +0.1 884,612 - BWI76_RS04295 0.80 -1.5 884,630 + BWI76_RS04295 0.84 +0.1 884,635 + BWI76_RS04295 0.85 -0.8 884,640 + BWI76_RS04295 0.87 +0.2 884,640 + BWI76_RS04295 0.87 +0.1 884,640 + BWI76_RS04295 0.87 -0.1 884,640 + BWI76_RS04295 0.87 +0.5 884,640 + BWI76_RS04295 0.87 -0.0 884,640 + BWI76_RS04295 0.87 +0.1 884,640 + BWI76_RS04295 0.87 -2.5 884,648 - BWI76_RS04295 0.89 +0.1 884,648 - BWI76_RS04295 0.89 -1.5 884,648 - BWI76_RS04295 0.89 -3.1 884,648 - BWI76_RS04295 0.89 +1.1 884,652 + BWI76_RS04295 0.90 -1.2 884,653 + +0.8 884,658 - -0.3 884,658 - -0.5 884,829 + -1.0 884,837 - -0.6 884,856 + +0.1 884,863 + +0.2 884,863 + -0.1 884,868 + +0.6 884,876 + -1.7 884,876 - +0.6 884,879 + -0.4 884,879 + -0.4 884,881 + +0.2 884,881 + +0.4 884,881 + +1.8 884,881 + -0.5 884,881 + +0.3 884,881 + -0.1 884,881 + -0.1 884,881 + +0.5 884,881 + -0.5 884,881 + +0.9 884,887 - -0.2 884,889 - +0.5 884,889 - +0.1 884,889 - +0.2 884,889 - +0.3 884,889 - -1.2 884,889 - +0.4 884,889 - -2.7 884,889 - +0.4 884,889 - -1.7 884,889 - +0.8 884,889 - -0.9 884,889 - -1.0 884,899 - +0.3 884,936 + -0.4 884,936 + +0.1 884,944 - -0.3 884,944 - -0.1 884,948 + +1.4 884,954 - +0.7 884,957 - -0.3 884,972 + +1.2 884,994 + -0.3 886,916 + -0.9 887,035 + -3.5 887,041 + +0.0
Or see this region's nucleotide sequence