Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02485 and BWI76_RS02490 are separated by 286 nucleotides BWI76_RS02490 and BWI76_RS02495 are separated by 23 nucleotides BWI76_RS02495 and BWI76_RS02500 are separated by 24 nucleotides BWI76_RS02500 and BWI76_RS02505 are separated by 270 nucleotides
BWI76_RS02485: BWI76_RS02485 - polar amino acid ABC transporter (PAAT) family, periplasmic amino acid-binding protein, at 510,980 to 511,711
_RS02485
BWI76_RS02490: BWI76_RS02490 - tRNA-Gly, at 511,998 to 512,073
_RS02490
BWI76_RS02495: BWI76_RS02495 - tRNA-Gly, at 512,097 to 512,172
_RS02495
BWI76_RS02500: BWI76_RS02500 - tRNA-Gly, at 512,197 to 512,272
_RS02500
BWI76_RS02505: BWI76_RS02505 - tRNA epoxyqueuosine(34) reductase QueG, at 512,543 to 513,682
_RS02505
Position (kb) 511
512
513 Strain fitness (log2 ratio) -1
0
1 at 511.044 kb on + strand at 511.044 kb on + strand at 511.152 kb on + strand, within BWI76_RS02485 at 511.186 kb on - strand, within BWI76_RS02485 at 511.349 kb on + strand, within BWI76_RS02485 at 511.357 kb on - strand, within BWI76_RS02485 at 511.388 kb on - strand, within BWI76_RS02485 at 511.481 kb on + strand, within BWI76_RS02485 at 511.488 kb on + strand, within BWI76_RS02485 at 511.550 kb on - strand, within BWI76_RS02485 at 511.559 kb on + strand, within BWI76_RS02485 at 512.582 kb on - strand at 512.584 kb on + strand at 512.689 kb on - strand, within BWI76_RS02505 at 512.733 kb on + strand, within BWI76_RS02505 at 512.733 kb on + strand, within BWI76_RS02505 at 512.733 kb on + strand, within BWI76_RS02505 at 512.868 kb on + strand, within BWI76_RS02505 at 513.045 kb on + strand, within BWI76_RS02505
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 511,044 + -0.1 511,044 + +0.5 511,152 + BWI76_RS02485 0.23 +1.0 511,186 - BWI76_RS02485 0.28 +0.9 511,349 + BWI76_RS02485 0.50 +0.1 511,357 - BWI76_RS02485 0.52 +0.6 511,388 - BWI76_RS02485 0.56 -0.1 511,481 + BWI76_RS02485 0.68 +0.2 511,488 + BWI76_RS02485 0.69 +0.6 511,550 - BWI76_RS02485 0.78 +0.3 511,559 + BWI76_RS02485 0.79 +0.3 512,582 - +0.3 512,584 + -1.7 512,689 - BWI76_RS02505 0.13 -0.5 512,733 + BWI76_RS02505 0.17 -0.3 512,733 + BWI76_RS02505 0.17 -1.0 512,733 + BWI76_RS02505 0.17 +0.2 512,868 + BWI76_RS02505 0.29 +0.2 513,045 + BWI76_RS02505 0.44 +0.1
Or see this region's nucleotide sequence