Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02475

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02470 and BWI76_RS02475 are separated by 93 nucleotidesBWI76_RS02475 and BWI76_RS02480 are separated by 94 nucleotidesBWI76_RS02480 and BWI76_RS02485 are separated by 41 nucleotides BWI76_RS02470: BWI76_RS02470 - phosphatidylserine decarboxylase, at 508,181 to 509,143 _RS02470 BWI76_RS02475: BWI76_RS02475 - ribosome small subunit-dependent GTPase, at 509,237 to 510,298 _RS02475 BWI76_RS02480: BWI76_RS02480 - oligoribonuclease, at 510,393 to 510,938 _RS02480 BWI76_RS02485: BWI76_RS02485 - polar amino acid ABC transporter (PAAT) family, periplasmic amino acid-binding protein, at 510,980 to 511,711 _RS02485 Position (kb) 509 510 511Strain fitness (log2 ratio) -1 0 1at 509.236 kb on - strandat 509.236 kb on - strandat 510.951 kb on + strandat 511.044 kb on + strandat 511.044 kb on + strandat 511.152 kb on + strand, within BWI76_RS02485at 511.186 kb on - strand, within BWI76_RS02485

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
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509,236 - +0.5
509,236 - +1.1
510,951 + +0.1
511,044 + -0.1
511,044 + +0.5
511,152 + BWI76_RS02485 0.23 +1.0
511,186 - BWI76_RS02485 0.28 +0.9

Or see this region's nucleotide sequence