Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02455 and BWI76_RS02460 are separated by 275 nucleotides BWI76_RS02460 and BWI76_RS02465 are separated by 119 nucleotides
BWI76_RS02455: BWI76_RS02455 - fumarate reductase flavoprotein subunit, at 501,667 to 503,457
_RS02455
BWI76_RS02460: BWI76_RS02460 - elongation factor P lysine(34) lysyltransferase, at 503,733 to 504,710
_RS02460
BWI76_RS02465: BWI76_RS02465 - miniconductance mechanosensitive channel MscM, at 504,830 to 508,156
_RS02465
Position (kb) 503
504
505 Strain fitness (log2 ratio) -1
0
1 at 503.038 kb on - strand, within BWI76_RS02455 at 503.087 kb on + strand, within BWI76_RS02455 at 503.144 kb on + strand, within BWI76_RS02455 at 503.153 kb on + strand, within BWI76_RS02455 at 503.313 kb on - strand at 503.319 kb on + strand at 503.409 kb on - strand at 503.414 kb on - strand at 503.513 kb on + strand at 503.658 kb on - strand at 503.658 kb on - strand at 504.818 kb on - strand at 504.869 kb on + strand at 504.905 kb on + strand at 504.913 kb on - strand at 505.004 kb on - strand at 505.183 kb on - strand, within BWI76_RS02465 at 505.285 kb on - strand, within BWI76_RS02465 at 505.339 kb on + strand, within BWI76_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 503,038 - BWI76_RS02455 0.77 -1.6 503,087 + BWI76_RS02455 0.79 -1.1 503,144 + BWI76_RS02455 0.82 +0.1 503,153 + BWI76_RS02455 0.83 +0.2 503,313 - +0.0 503,319 + -1.1 503,409 - +0.6 503,414 - -0.2 503,513 + +0.5 503,658 - +0.4 503,658 - +0.5 504,818 - +0.5 504,869 + -1.4 504,905 + +0.9 504,913 - +0.3 505,004 - -1.4 505,183 - BWI76_RS02465 0.11 +0.1 505,285 - BWI76_RS02465 0.14 +0.0 505,339 + BWI76_RS02465 0.15 -0.0
Or see this region's nucleotide sequence