Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01450

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01430 and BWI76_RS01435 are separated by 438 nucleotidesBWI76_RS01435 and BWI76_RS01440 are separated by 10 nucleotidesBWI76_RS01440 and BWI76_RS01445 are separated by 119 nucleotidesBWI76_RS01445 and BWI76_RS01450 are separated by 5 nucleotidesBWI76_RS01450 and BWI76_RS01455 are separated by 116 nucleotides BWI76_RS01430: BWI76_RS01430 - type I pantothenate kinase, at 292,649 to 293,599 _RS01430 BWI76_RS01435: BWI76_RS01435 - tRNA-Thr, at 294,038 to 294,113 _RS01435 BWI76_RS01440: BWI76_RS01440 - tRNA-Tyr, at 294,124 to 294,208 _RS01440 BWI76_RS01445: BWI76_RS01445 - tRNA-Gly, at 294,328 to 294,402 _RS01445 BWI76_RS01450: BWI76_RS01450 - tRNA-Thr, at 294,408 to 294,483 _RS01450 BWI76_RS01455: BWI76_RS01455 - elongation factor Tu, at 294,600 to 295,784 _RS01455 Position (kb) 294 295Strain fitness (log2 ratio) -2 -1 0 1 2at 293.610 kb on - strandat 293.649 kb on - strandat 293.650 kb on - strandat 293.683 kb on - strandat 293.688 kb on - strandat 293.749 kb on + strandat 293.749 kb on + strandat 293.749 kb on + strandat 293.749 kb on + strandat 293.766 kb on + strandat 293.769 kb on + strandat 293.777 kb on - strandat 293.796 kb on + strandat 293.798 kb on - strandat 293.819 kb on - strandat 293.819 kb on - strandat 293.862 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
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293,610 - +0.2
293,649 - -1.5
293,650 - +0.4
293,683 - -1.8
293,688 - -0.7
293,749 + +0.6
293,749 + +0.2
293,749 + +1.7
293,749 + +0.5
293,766 + -0.6
293,769 + -0.2
293,777 - -0.5
293,796 + -0.4
293,798 - +0.6
293,819 - +1.9
293,819 - +0.0
293,862 + +0.3

Or see this region's nucleotide sequence