Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01430 and BWI76_RS01435 are separated by 438 nucleotides BWI76_RS01435 and BWI76_RS01440 are separated by 10 nucleotides BWI76_RS01440 and BWI76_RS01445 are separated by 119 nucleotides BWI76_RS01445 and BWI76_RS01450 are separated by 5 nucleotides BWI76_RS01450 and BWI76_RS01455 are separated by 116 nucleotides
BWI76_RS01430: BWI76_RS01430 - type I pantothenate kinase, at 292,649 to 293,599
_RS01430
BWI76_RS01435: BWI76_RS01435 - tRNA-Thr, at 294,038 to 294,113
_RS01435
BWI76_RS01440: BWI76_RS01440 - tRNA-Tyr, at 294,124 to 294,208
_RS01440
BWI76_RS01445: BWI76_RS01445 - tRNA-Gly, at 294,328 to 294,402
_RS01445
BWI76_RS01450: BWI76_RS01450 - tRNA-Thr, at 294,408 to 294,483
_RS01450
BWI76_RS01455: BWI76_RS01455 - elongation factor Tu, at 294,600 to 295,784
_RS01455
Position (kb)
294
295 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 293.610 kb on - strand at 293.649 kb on - strand at 293.650 kb on - strand at 293.683 kb on - strand at 293.688 kb on - strand at 293.749 kb on + strand at 293.749 kb on + strand at 293.749 kb on + strand at 293.749 kb on + strand at 293.766 kb on + strand at 293.769 kb on + strand at 293.777 kb on - strand at 293.796 kb on + strand at 293.798 kb on - strand at 293.819 kb on - strand at 293.819 kb on - strand at 293.862 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 293,610 - +0.2 293,649 - -1.5 293,650 - +0.4 293,683 - -1.8 293,688 - -0.7 293,749 + +0.6 293,749 + +0.2 293,749 + +1.7 293,749 + +0.5 293,766 + -0.6 293,769 + -0.2 293,777 - -0.5 293,796 + -0.4 293,798 - +0.6 293,819 - +1.9 293,819 - +0.0 293,862 + +0.3
Or see this region's nucleotide sequence