Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01335 and BWI76_RS01340 are separated by 6 nucleotides BWI76_RS01340 and BWI76_RS01345 are separated by 177 nucleotides BWI76_RS01345 and BWI76_RS01350 are separated by 54 nucleotides BWI76_RS01350 and BWI76_RS01355 are separated by 44 nucleotides
BWI76_RS01335: BWI76_RS01335 - DNase TatD, at 273,301 to 274,083
_RS01335
BWI76_RS01340: BWI76_RS01340 - transcription/translation regulatory transformer protein RfaH, at 274,090 to 274,578
_RS01340
BWI76_RS01345: BWI76_RS01345 - 3-octaprenyl-4-hydroxybenzoate decarboxylase, at 274,756 to 276,225
_RS01345
BWI76_RS01350: BWI76_RS01350 - NAD(P)H-flavin reductase, at 276,280 to 276,981
_RS01350
BWI76_RS01355: BWI76_RS01355 - hypothetical protein, at 277,026 to 277,337
_RS01355
Position (kb) 274
275
276
277 Strain fitness (log2 ratio) -2
-1
0
1
2 at 273.799 kb on - strand, within BWI76_RS01335 at 273.848 kb on + strand, within BWI76_RS01335 at 273.985 kb on + strand, within BWI76_RS01335 at 274.028 kb on + strand at 274.028 kb on - strand at 274.036 kb on - strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.131 kb on - strand at 274.131 kb on - strand at 274.131 kb on - strand at 274.540 kb on - strand at 274.730 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand at 276.235 kb on + strand at 276.235 kb on + strand at 276.262 kb on + strand at 276.308 kb on + strand at 276.740 kb on + strand, within BWI76_RS01350 at 277.128 kb on - strand, within BWI76_RS01355 at 277.128 kb on - strand, within BWI76_RS01355 at 277.174 kb on + strand, within BWI76_RS01355 at 277.174 kb on + strand, within BWI76_RS01355 at 277.182 kb on - strand, within BWI76_RS01355 at 277.213 kb on + strand, within BWI76_RS01355 at 277.221 kb on - strand, within BWI76_RS01355
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 273,799 - BWI76_RS01335 0.64 +0.2 273,848 + BWI76_RS01335 0.70 +0.5 273,985 + BWI76_RS01335 0.87 -1.1 274,028 + +0.4 274,028 - -0.1 274,036 - +0.1 274,123 + +2.1 274,123 + +0.4 274,123 + +1.5 274,123 + +0.4 274,131 - +0.3 274,131 - -2.2 274,131 - -0.3 274,540 - +1.8 274,730 + +0.4 274,733 + -0.8 274,733 + +0.2 274,733 + +0.9 274,733 + -0.1 274,733 + +0.5 274,733 + -0.6 276,235 + -1.3 276,235 + -0.1 276,262 + +0.0 276,308 + +0.1 276,740 + BWI76_RS01350 0.66 -1.1 277,128 - BWI76_RS01355 0.33 +0.4 277,128 - BWI76_RS01355 0.33 +0.4 277,174 + BWI76_RS01355 0.47 -0.6 277,174 + BWI76_RS01355 0.47 +0.3 277,182 - BWI76_RS01355 0.50 -1.2 277,213 + BWI76_RS01355 0.60 -0.0 277,221 - BWI76_RS01355 0.62 +0.2
Or see this region's nucleotide sequence