Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01125 and BWI76_RS01130 overlap by 4 nucleotides BWI76_RS01130 and BWI76_RS01135 are separated by 11 nucleotides BWI76_RS01135 and BWI76_RS01140 are separated by 240 nucleotides
BWI76_RS01125: BWI76_RS01125 - 4-alpha-L-fucosyltransferase, at 231,823 to 232,902
_RS01125
BWI76_RS01130: BWI76_RS01130 - enterobacterial common antigen polymerase, at 232,899 to 234,245
_RS01130
BWI76_RS01135: BWI76_RS01135 - lipopolysaccharide N-acetylmannosaminouronosyltransferase, at 234,257 to 234,997
_RS01135
BWI76_RS01140: BWI76_RS01140 - amino acid permease, at 235,238 to 236,623
_RS01140
Position (kb) 232
233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.139 kb on - strand, within BWI76_RS01125 at 232.219 kb on - strand, within BWI76_RS01125 at 232.534 kb on + strand, within BWI76_RS01125 at 232.534 kb on + strand, within BWI76_RS01125 at 232.534 kb on + strand, within BWI76_RS01125 at 232.542 kb on - strand, within BWI76_RS01125 at 232.712 kb on - strand, within BWI76_RS01125 at 232.727 kb on + strand, within BWI76_RS01125 at 232.768 kb on + strand, within BWI76_RS01125 at 232.795 kb on - strand at 232.839 kb on - strand at 234.278 kb on - strand at 234.297 kb on - strand at 234.607 kb on + strand, within BWI76_RS01135 at 234.644 kb on - strand, within BWI76_RS01135 at 234.795 kb on + strand, within BWI76_RS01135 at 234.820 kb on + strand, within BWI76_RS01135 at 234.820 kb on + strand, within BWI76_RS01135 at 234.820 kb on + strand, within BWI76_RS01135 at 234.828 kb on - strand, within BWI76_RS01135 at 234.839 kb on + strand, within BWI76_RS01135 at 234.986 kb on + strand at 235.121 kb on + strand at 235.121 kb on + strand at 235.121 kb on + strand at 235.124 kb on - strand at 235.129 kb on - strand at 235.183 kb on - strand at 235.185 kb on + strand at 235.188 kb on - strand at 235.200 kb on - strand at 235.210 kb on - strand at 235.216 kb on - strand at 235.216 kb on - strand at 235.216 kb on - strand at 235.218 kb on + strand at 235.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 232,139 - BWI76_RS01125 0.29 +2.1 232,219 - BWI76_RS01125 0.37 -2.0 232,534 + BWI76_RS01125 0.66 -1.5 232,534 + BWI76_RS01125 0.66 +1.0 232,534 + BWI76_RS01125 0.66 +1.0 232,542 - BWI76_RS01125 0.67 -0.2 232,712 - BWI76_RS01125 0.82 -2.3 232,727 + BWI76_RS01125 0.84 -0.3 232,768 + BWI76_RS01125 0.88 -0.4 232,795 - +0.5 232,839 - -1.5 234,278 - -2.2 234,297 - +0.9 234,607 + BWI76_RS01135 0.47 +0.3 234,644 - BWI76_RS01135 0.52 +0.3 234,795 + BWI76_RS01135 0.73 +0.0 234,820 + BWI76_RS01135 0.76 -0.5 234,820 + BWI76_RS01135 0.76 -0.1 234,820 + BWI76_RS01135 0.76 -1.0 234,828 - BWI76_RS01135 0.77 -0.4 234,839 + BWI76_RS01135 0.79 +0.3 234,986 + +1.0 235,121 + +1.2 235,121 + +0.4 235,121 + +0.0 235,124 - +1.3 235,129 - +0.4 235,183 - -1.5 235,185 + +0.8 235,188 - +2.3 235,200 - -0.3 235,210 - -0.7 235,216 - +0.6 235,216 - +0.1 235,216 - -0.5 235,218 + +0.8 235,227 - -0.0
Or see this region's nucleotide sequence