Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01070 and BWI76_RS01075 are separated by 329 nucleotides BWI76_RS01075 and BWI76_RS01080 are separated by 242 nucleotides
BWI76_RS01070: BWI76_RS01070 - thiol reductase thioredoxin, at 220,053 to 220,382
_RS01070
BWI76_RS01075: BWI76_RS01075 - transcription termination factor Rho, at 220,712 to 221,971
_RS01075
BWI76_RS01080: BWI76_RS01080 - undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase, at 222,214 to 223,308
_RS01080
Position (kb) 220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 219.742 kb on - strand at 219.863 kb on + strand at 219.901 kb on + strand at 220.103 kb on + strand, within BWI76_RS01070 at 220.103 kb on + strand, within BWI76_RS01070 at 220.103 kb on + strand, within BWI76_RS01070 at 220.111 kb on - strand, within BWI76_RS01070 at 220.125 kb on - strand, within BWI76_RS01070 at 220.125 kb on - strand, within BWI76_RS01070 at 220.155 kb on - strand, within BWI76_RS01070 at 220.226 kb on + strand, within BWI76_RS01070 at 220.337 kb on + strand, within BWI76_RS01070 at 220.344 kb on + strand, within BWI76_RS01070 at 220.345 kb on - strand, within BWI76_RS01070 at 220.345 kb on - strand, within BWI76_RS01070 at 220.414 kb on - strand at 220.433 kb on - strand at 220.448 kb on + strand at 220.504 kb on + strand at 222.063 kb on + strand at 222.063 kb on + strand at 222.071 kb on - strand at 222.071 kb on - strand at 222.073 kb on - strand at 222.081 kb on - strand at 222.081 kb on - strand at 222.137 kb on + strand at 222.142 kb on + strand at 222.145 kb on - strand at 222.157 kb on + strand at 222.159 kb on - strand at 222.171 kb on + strand at 222.171 kb on + strand at 222.179 kb on - strand at 222.179 kb on - strand at 222.179 kb on - strand at 222.179 kb on - strand at 222.179 kb on - strand at 222.179 kb on - strand at 222.196 kb on + strand at 222.196 kb on + strand at 222.201 kb on + strand at 222.203 kb on + strand at 222.224 kb on - strand at 222.270 kb on + strand at 222.310 kb on - strand at 222.310 kb on - strand at 222.345 kb on - strand, within BWI76_RS01080 at 222.353 kb on - strand, within BWI76_RS01080 at 222.434 kb on + strand, within BWI76_RS01080 at 222.435 kb on + strand, within BWI76_RS01080 at 222.439 kb on + strand, within BWI76_RS01080 at 222.441 kb on - strand, within BWI76_RS01080 at 222.441 kb on - strand, within BWI76_RS01080 at 222.447 kb on - strand, within BWI76_RS01080 at 222.447 kb on - strand, within BWI76_RS01080 at 222.449 kb on + strand, within BWI76_RS01080 at 222.496 kb on - strand, within BWI76_RS01080 at 222.612 kb on - strand, within BWI76_RS01080 at 222.629 kb on + strand, within BWI76_RS01080 at 222.647 kb on - strand, within BWI76_RS01080 at 222.703 kb on + strand, within BWI76_RS01080 at 222.762 kb on - strand, within BWI76_RS01080 at 222.842 kb on + strand, within BWI76_RS01080 at 222.921 kb on + strand, within BWI76_RS01080 at 222.935 kb on + strand, within BWI76_RS01080
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 219,742 - +3.9 219,863 + +3.5 219,901 + +0.2 220,103 + BWI76_RS01070 0.15 +6.1 220,103 + BWI76_RS01070 0.15 +6.4 220,103 + BWI76_RS01070 0.15 +6.5 220,111 - BWI76_RS01070 0.18 +7.1 220,125 - BWI76_RS01070 0.22 +6.4 220,125 - BWI76_RS01070 0.22 +6.0 220,155 - BWI76_RS01070 0.31 +5.9 220,226 + BWI76_RS01070 0.52 +7.0 220,337 + BWI76_RS01070 0.86 +7.3 220,344 + BWI76_RS01070 0.88 +6.3 220,345 - BWI76_RS01070 0.88 +6.5 220,345 - BWI76_RS01070 0.88 +6.7 220,414 - +3.5 220,433 - +1.6 220,448 + -2.4 220,504 + -2.6 222,063 + -1.0 222,063 + +0.7 222,071 - -0.5 222,071 - +2.0 222,073 - -0.3 222,081 - -2.2 222,081 - -0.8 222,137 + -0.7 222,142 + +0.1 222,145 - -0.2 222,157 + +0.3 222,159 - +0.3 222,171 + +0.4 222,171 + -0.1 222,179 - +0.1 222,179 - -0.2 222,179 - +0.1 222,179 - +3.5 222,179 - -0.3 222,179 - +1.3 222,196 + +0.1 222,196 + +0.2 222,201 + -0.6 222,203 + +0.2 222,224 - +0.3 222,270 + +1.2 222,310 - -0.4 222,310 - +0.3 222,345 - BWI76_RS01080 0.12 +0.3 222,353 - BWI76_RS01080 0.13 +0.3 222,434 + BWI76_RS01080 0.20 -2.5 222,435 + BWI76_RS01080 0.20 +0.1 222,439 + BWI76_RS01080 0.21 +1.3 222,441 - BWI76_RS01080 0.21 -0.7 222,441 - BWI76_RS01080 0.21 -0.9 222,447 - BWI76_RS01080 0.21 -0.2 222,447 - BWI76_RS01080 0.21 -0.4 222,449 + BWI76_RS01080 0.21 -1.4 222,496 - BWI76_RS01080 0.26 -2.0 222,612 - BWI76_RS01080 0.36 -1.9 222,629 + BWI76_RS01080 0.38 -0.1 222,647 - BWI76_RS01080 0.40 -1.8 222,703 + BWI76_RS01080 0.45 +0.3 222,762 - BWI76_RS01080 0.50 -1.3 222,842 + BWI76_RS01080 0.57 -0.1 222,921 + BWI76_RS01080 0.65 -0.4 222,935 + BWI76_RS01080 0.66 +0.3
Or see this region's nucleotide sequence