Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00920

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00905 and BWI76_RS00910 are separated by 61 nucleotidesBWI76_RS00910 and BWI76_RS00915 are separated by 108 nucleotidesBWI76_RS00915 and BWI76_RS00920 are separated by 169 nucleotidesBWI76_RS00920 and BWI76_RS00925 are separated by 54 nucleotidesBWI76_RS00925 and BWI76_RS00930 are separated by 55 nucleotidesBWI76_RS00930 and BWI76_RS00935 are separated by 54 nucleotidesBWI76_RS00935 and BWI76_RS00940 are separated by 82 nucleotides BWI76_RS00905: BWI76_RS00905 - 16S ribosomal RNA, at 186,491 to 188,044 _RS00905 BWI76_RS00910: BWI76_RS00910 - tRNA-Ile, at 188,106 to 188,182 _RS00910 BWI76_RS00915: BWI76_RS00915 - tRNA-Ala, at 188,291 to 188,366 _RS00915 BWI76_RS00920: BWI76_RS00920 - 23S ribosomal RNA, at 188,536 to 191,462 _RS00920 BWI76_RS00925: BWI76_RS00925 - 5S ribosomal RNA, at 191,517 to 191,632 _RS00925 BWI76_RS00930: BWI76_RS00930 - tRNA-Asp, at 191,688 to 191,764 _RS00930 BWI76_RS00935: BWI76_RS00935 - tRNA-Trp, at 191,819 to 191,894 _RS00935 BWI76_RS00940: BWI76_RS00940 - transcriptional regulator HdfR, at 191,977 to 192,798 _RS00940 Position (kb) 188 189 190 191 192Strain fitness (log2 ratio) -1 0 1 2at 192.066 kb on + strand, within BWI76_RS00940at 192.123 kb on - strand, within BWI76_RS00940at 192.126 kb on + strand, within BWI76_RS00940at 192.126 kb on + strand, within BWI76_RS00940at 192.131 kb on + strand, within BWI76_RS00940at 192.136 kb on + strand, within BWI76_RS00940at 192.138 kb on + strand, within BWI76_RS00940at 192.263 kb on - strand, within BWI76_RS00940at 192.413 kb on + strand, within BWI76_RS00940at 192.461 kb on + strand, within BWI76_RS00940at 192.461 kb on + strand, within BWI76_RS00940

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
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192,066 + BWI76_RS00940 0.11 +0.7
192,123 - BWI76_RS00940 0.18 +0.4
192,126 + BWI76_RS00940 0.18 +0.4
192,126 + BWI76_RS00940 0.18 +0.4
192,131 + BWI76_RS00940 0.19 +1.3
192,136 + BWI76_RS00940 0.19 +1.1
192,138 + BWI76_RS00940 0.20 +0.9
192,263 - BWI76_RS00940 0.35 +2.0
192,413 + BWI76_RS00940 0.53 +0.6
192,461 + BWI76_RS00940 0.59 +1.4
192,461 + BWI76_RS00940 0.59 +0.1

Or see this region's nucleotide sequence