Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27455

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27450 and RR42_RS27455 are separated by 487 nucleotidesRR42_RS27455 and RR42_RS27460 are separated by 204 nucleotides RR42_RS27450: RR42_RS27450 - porin, at 1,509,815 to 1,510,888 _RS27450 RR42_RS27455: RR42_RS27455 - transcriptional regulator, at 1,511,376 to 1,512,299 _RS27455 RR42_RS27460: RR42_RS27460 - hypothetical protein, at 1,512,504 to 1,513,622 _RS27460 Position (kb) 1511 1512 1513Strain fitness (log2 ratio) -2 -1 0 1at 1510.413 kb on + strand, within RR42_RS27450at 1510.414 kb on - strand, within RR42_RS27450at 1510.440 kb on + strand, within RR42_RS27450at 1510.440 kb on + strand, within RR42_RS27450at 1510.440 kb on + strand, within RR42_RS27450at 1510.441 kb on - strand, within RR42_RS27450at 1510.470 kb on + strand, within RR42_RS27450at 1510.470 kb on + strand, within RR42_RS27450at 1510.471 kb on - strand, within RR42_RS27450at 1510.471 kb on - strand, within RR42_RS27450at 1510.512 kb on + strand, within RR42_RS27450at 1510.776 kb on + strand, within RR42_RS27450at 1510.776 kb on + strand, within RR42_RS27450at 1510.777 kb on - strand, within RR42_RS27450at 1510.777 kb on - strand, within RR42_RS27450at 1510.920 kb on - strandat 1510.920 kb on - strandat 1510.985 kb on + strandat 1510.989 kb on + strandat 1511.044 kb on + strandat 1511.044 kb on + strandat 1511.240 kb on + strandat 1511.240 kb on + strandat 1511.241 kb on - strandat 1511.241 kb on - strandat 1511.241 kb on - strandat 1511.241 kb on - strandat 1511.283 kb on + strandat 1511.284 kb on - strandat 1511.296 kb on + strandat 1511.296 kb on + strandat 1511.296 kb on + strandat 1511.297 kb on - strandat 1511.297 kb on - strandat 1511.297 kb on - strandat 1512.271 kb on + strandat 1512.272 kb on - strandat 1512.272 kb on - strandat 1512.278 kb on - strandat 1512.320 kb on + strandat 1512.343 kb on + strandat 1512.343 kb on + strandat 1512.343 kb on + strandat 1512.344 kb on - strandat 1512.448 kb on + strandat 1512.718 kb on + strand, within RR42_RS27460at 1512.719 kb on - strand, within RR42_RS27460at 1512.719 kb on - strand, within RR42_RS27460at 1512.719 kb on - strand, within RR42_RS27460at 1512.719 kb on - strand, within RR42_RS27460at 1512.856 kb on + strand, within RR42_RS27460at 1512.856 kb on + strand, within RR42_RS27460at 1513.001 kb on - strand, within RR42_RS27460at 1513.001 kb on - strand, within RR42_RS27460at 1513.183 kb on + strand, within RR42_RS27460at 1513.237 kb on + strand, within RR42_RS27460

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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1,510,413 + RR42_RS27450 0.56 +0.9
1,510,414 - RR42_RS27450 0.56 -0.4
1,510,440 + RR42_RS27450 0.58 +0.8
1,510,440 + RR42_RS27450 0.58 -1.0
1,510,440 + RR42_RS27450 0.58 -0.1
1,510,441 - RR42_RS27450 0.58 -0.6
1,510,470 + RR42_RS27450 0.61 -1.1
1,510,470 + RR42_RS27450 0.61 +0.4
1,510,471 - RR42_RS27450 0.61 +0.8
1,510,471 - RR42_RS27450 0.61 -0.1
1,510,512 + RR42_RS27450 0.65 +0.8
1,510,776 + RR42_RS27450 0.89 +0.1
1,510,776 + RR42_RS27450 0.89 -0.6
1,510,777 - RR42_RS27450 0.90 +0.6
1,510,777 - RR42_RS27450 0.90 +0.5
1,510,920 - +0.1
1,510,920 - -0.8
1,510,985 + +0.0
1,510,989 + -0.5
1,511,044 + +1.2
1,511,044 + +0.2
1,511,240 + +0.0
1,511,240 + +0.5
1,511,241 - -0.3
1,511,241 - +1.2
1,511,241 - -1.3
1,511,241 - +0.5
1,511,283 + -0.7
1,511,284 - +1.2
1,511,296 + -0.1
1,511,296 + +0.6
1,511,296 + -0.0
1,511,297 - -0.6
1,511,297 - -2.5
1,511,297 - -0.1
1,512,271 + -1.1
1,512,272 - -0.3
1,512,272 - +0.5
1,512,278 - -1.7
1,512,320 + -0.8
1,512,343 + -0.4
1,512,343 + +0.2
1,512,343 + -0.5
1,512,344 - -0.8
1,512,448 + -0.8
1,512,718 + RR42_RS27460 0.19 -1.8
1,512,719 - RR42_RS27460 0.19 -1.9
1,512,719 - RR42_RS27460 0.19 +0.8
1,512,719 - RR42_RS27460 0.19 -0.2
1,512,719 - RR42_RS27460 0.19 -0.3
1,512,856 + RR42_RS27460 0.31 -0.1
1,512,856 + RR42_RS27460 0.31 +0.9
1,513,001 - RR42_RS27460 0.44 -0.4
1,513,001 - RR42_RS27460 0.44 +0.0
1,513,183 + RR42_RS27460 0.61 -0.7
1,513,237 + RR42_RS27460 0.66 +0.1

Or see this region's nucleotide sequence