Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26380

Experiment: Valeric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS26370 and RR42_RS26375 are separated by 68 nucleotidesRR42_RS26375 and RR42_RS26380 are separated by 460 nucleotidesRR42_RS26380 and RR42_RS26385 are separated by 21 nucleotides RR42_RS26370: RR42_RS26370 - tautomerase, at 1,273,368 to 1,273,760 _RS26370 RR42_RS26375: RR42_RS26375 - hypothetical protein, at 1,273,829 to 1,274,275 _RS26375 RR42_RS26380: RR42_RS26380 - MFS transporter, at 1,274,736 to 1,276,031 _RS26380 RR42_RS26385: RR42_RS26385 - hypothetical protein, at 1,276,053 to 1,277,435 _RS26385 Position (kb) 1274 1275 1276 1277Strain fitness (log2 ratio) -1 0 1at 1273.878 kb on - strand, within RR42_RS26375at 1274.046 kb on + strand, within RR42_RS26375at 1274.046 kb on + strand, within RR42_RS26375at 1274.047 kb on - strand, within RR42_RS26375at 1274.047 kb on - strand, within RR42_RS26375at 1274.187 kb on + strand, within RR42_RS26375at 1274.187 kb on + strand, within RR42_RS26375at 1274.187 kb on + strand, within RR42_RS26375at 1274.187 kb on + strand, within RR42_RS26375at 1274.188 kb on - strand, within RR42_RS26375at 1274.188 kb on - strand, within RR42_RS26375at 1274.188 kb on - strand, within RR42_RS26375at 1274.242 kb on - strandat 1274.242 kb on - strandat 1274.242 kb on - strandat 1274.259 kb on + strandat 1274.259 kb on + strandat 1274.394 kb on - strandat 1274.479 kb on - strandat 1274.496 kb on + strandat 1274.497 kb on - strandat 1274.514 kb on + strandat 1274.692 kb on + strandat 1274.912 kb on + strand, within RR42_RS26380at 1275.043 kb on - strand, within RR42_RS26380at 1275.243 kb on + strand, within RR42_RS26380at 1275.243 kb on + strand, within RR42_RS26380at 1275.244 kb on - strand, within RR42_RS26380at 1275.244 kb on - strand, within RR42_RS26380at 1275.309 kb on + strand, within RR42_RS26380at 1275.310 kb on - strand, within RR42_RS26380at 1275.550 kb on - strand, within RR42_RS26380at 1275.687 kb on + strand, within RR42_RS26380at 1275.688 kb on - strand, within RR42_RS26380at 1275.801 kb on + strand, within RR42_RS26380at 1275.826 kb on - strand, within RR42_RS26380at 1275.927 kb on + strandat 1275.966 kb on + strandat 1275.967 kb on - strandat 1275.967 kb on - strandat 1275.977 kb on + strandat 1275.986 kb on + strandat 1275.987 kb on - strandat 1276.043 kb on - strandat 1276.054 kb on + strandat 1276.093 kb on + strandat 1276.333 kb on + strand, within RR42_RS26385at 1276.333 kb on + strand, within RR42_RS26385at 1276.389 kb on + strand, within RR42_RS26385at 1276.390 kb on - strand, within RR42_RS26385at 1276.526 kb on - strand, within RR42_RS26385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
remove
1,273,878 - RR42_RS26375 0.11 +1.4
1,274,046 + RR42_RS26375 0.49 -1.2
1,274,046 + RR42_RS26375 0.49 +0.2
1,274,047 - RR42_RS26375 0.49 +0.6
1,274,047 - RR42_RS26375 0.49 -0.4
1,274,187 + RR42_RS26375 0.80 -0.5
1,274,187 + RR42_RS26375 0.80 +0.3
1,274,187 + RR42_RS26375 0.80 +0.4
1,274,187 + RR42_RS26375 0.80 +0.2
1,274,188 - RR42_RS26375 0.80 +0.6
1,274,188 - RR42_RS26375 0.80 +0.9
1,274,188 - RR42_RS26375 0.80 +0.9
1,274,242 - -0.3
1,274,242 - +0.4
1,274,242 - +0.3
1,274,259 + -1.7
1,274,259 + +0.7
1,274,394 - -0.9
1,274,479 - -0.4
1,274,496 + -0.4
1,274,497 - -0.2
1,274,514 + -0.2
1,274,692 + +0.0
1,274,912 + RR42_RS26380 0.14 +0.9
1,275,043 - RR42_RS26380 0.24 +0.5
1,275,243 + RR42_RS26380 0.39 -1.4
1,275,243 + RR42_RS26380 0.39 +0.2
1,275,244 - RR42_RS26380 0.39 +0.7
1,275,244 - RR42_RS26380 0.39 +0.2
1,275,309 + RR42_RS26380 0.44 +0.5
1,275,310 - RR42_RS26380 0.44 -0.1
1,275,550 - RR42_RS26380 0.63 -0.7
1,275,687 + RR42_RS26380 0.73 -0.3
1,275,688 - RR42_RS26380 0.73 -0.4
1,275,801 + RR42_RS26380 0.82 +0.4
1,275,826 - RR42_RS26380 0.84 -0.4
1,275,927 + +1.0
1,275,966 + -0.4
1,275,967 - +0.5
1,275,967 - +0.8
1,275,977 + +0.1
1,275,986 + -0.9
1,275,987 - -1.0
1,276,043 - +0.8
1,276,054 + -0.2
1,276,093 + +0.1
1,276,333 + RR42_RS26385 0.20 -0.7
1,276,333 + RR42_RS26385 0.20 -0.1
1,276,389 + RR42_RS26385 0.24 +1.6
1,276,390 - RR42_RS26385 0.24 -0.7
1,276,526 - RR42_RS26385 0.34 +0.2

Or see this region's nucleotide sequence