Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25120 and RR42_RS25125 are separated by 323 nucleotides RR42_RS25125 and RR42_RS25130 are separated by 307 nucleotides
RR42_RS25120: RR42_RS25120 - IclR family transcriptional regulator, at 972,802 to 973,581
_RS25120
RR42_RS25125: RR42_RS25125 - 3-oxoacyl-ACP reductase, at 973,905 to 974,654
_RS25125
RR42_RS25130: RR42_RS25130 - pyruvate carboxylase, at 974,962 to 978,465
_RS25130
Position (kb) 973
974
975 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 972.993 kb on - strand, within RR42_RS25120 at 972.993 kb on - strand, within RR42_RS25120 at 973.106 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.243 kb on - strand, within RR42_RS25120 at 973.243 kb on - strand, within RR42_RS25120 at 973.347 kb on - strand, within RR42_RS25120 at 973.507 kb on - strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.815 kb on + strand at 973.817 kb on + strand at 973.818 kb on - strand at 973.818 kb on - strand at 973.888 kb on + strand at 974.200 kb on - strand, within RR42_RS25125 at 974.200 kb on - strand, within RR42_RS25125 at 974.200 kb on - strand, within RR42_RS25125 at 974.537 kb on + strand, within RR42_RS25125 at 974.537 kb on + strand, within RR42_RS25125 at 974.537 kb on + strand, within RR42_RS25125 at 974.565 kb on - strand, within RR42_RS25125 at 974.565 kb on - strand, within RR42_RS25125 at 974.968 kb on + strand at 974.969 kb on - strand at 975.118 kb on + strand at 975.119 kb on - strand at 975.569 kb on - strand, within RR42_RS25130 at 975.569 kb on - strand, within RR42_RS25130 at 975.603 kb on - strand, within RR42_RS25130 at 975.649 kb on + strand, within RR42_RS25130
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 972,993 - RR42_RS25120 0.24 +0.4 972,993 - RR42_RS25120 0.24 +0.1 973,106 + RR42_RS25120 0.39 -0.7 973,235 + RR42_RS25120 0.56 +0.8 973,235 + RR42_RS25120 0.56 -0.6 973,235 + RR42_RS25120 0.56 -0.7 973,243 - RR42_RS25120 0.57 +0.3 973,243 - RR42_RS25120 0.57 +1.8 973,347 - RR42_RS25120 0.70 +1.0 973,507 - -1.0 973,680 + +0.2 973,680 + -0.2 973,680 + +1.3 973,680 + +0.5 973,815 + -0.5 973,817 + -0.8 973,818 - +0.5 973,818 - -0.8 973,888 + -2.2 974,200 - RR42_RS25125 0.39 +0.1 974,200 - RR42_RS25125 0.39 -0.1 974,200 - RR42_RS25125 0.39 -0.3 974,537 + RR42_RS25125 0.84 -1.1 974,537 + RR42_RS25125 0.84 +0.1 974,537 + RR42_RS25125 0.84 -2.9 974,565 - RR42_RS25125 0.88 -0.0 974,565 - RR42_RS25125 0.88 +1.7 974,968 + -1.0 974,969 - +1.0 975,118 + +0.7 975,119 - +0.4 975,569 - RR42_RS25130 0.17 +0.1 975,569 - RR42_RS25130 0.17 -0.6 975,603 - RR42_RS25130 0.18 +0.4 975,649 + RR42_RS25130 0.20 -1.3
Or see this region's nucleotide sequence