Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25075 and RR42_RS25080 are separated by 266 nucleotides RR42_RS25080 and RR42_RS25085 are separated by 155 nucleotides
RR42_RS25075: RR42_RS25075 - 2-methylcitrate dehydratase, at 963,189 to 964,598
_RS25075
RR42_RS25080: RR42_RS25080 - sodium:proton antiporter, at 964,865 to 966,466
_RS25080
RR42_RS25085: RR42_RS25085 - transcriptional regulator, at 966,622 to 967,557
_RS25085
Position (kb) 964
965
966
967 Strain fitness (log2 ratio) -2
-1
0
1
2 at 963.988 kb on + strand, within RR42_RS25075 at 963.989 kb on - strand, within RR42_RS25075 at 964.002 kb on - strand, within RR42_RS25075 at 964.002 kb on - strand, within RR42_RS25075 at 964.002 kb on - strand, within RR42_RS25075 at 964.102 kb on + strand, within RR42_RS25075 at 964.102 kb on + strand, within RR42_RS25075 at 964.103 kb on - strand, within RR42_RS25075 at 964.151 kb on - strand, within RR42_RS25075 at 964.264 kb on + strand, within RR42_RS25075 at 964.264 kb on + strand, within RR42_RS25075 at 964.265 kb on - strand, within RR42_RS25075 at 964.369 kb on + strand, within RR42_RS25075 at 964.370 kb on - strand, within RR42_RS25075 at 964.484 kb on + strand at 964.484 kb on + strand at 964.484 kb on + strand at 964.485 kb on - strand at 964.808 kb on + strand at 964.829 kb on + strand at 964.830 kb on - strand at 964.999 kb on - strand at 965.184 kb on + strand, within RR42_RS25080 at 965.476 kb on - strand, within RR42_RS25080 at 965.476 kb on - strand, within RR42_RS25080 at 965.505 kb on - strand, within RR42_RS25080 at 965.547 kb on - strand, within RR42_RS25080 at 965.774 kb on + strand, within RR42_RS25080 at 965.775 kb on - strand, within RR42_RS25080 at 965.775 kb on - strand, within RR42_RS25080 at 966.187 kb on - strand, within RR42_RS25080 at 966.187 kb on - strand, within RR42_RS25080 at 966.233 kb on + strand, within RR42_RS25080 at 966.233 kb on + strand, within RR42_RS25080 at 966.233 kb on + strand, within RR42_RS25080 at 966.233 kb on + strand, within RR42_RS25080 at 966.234 kb on - strand, within RR42_RS25080 at 966.348 kb on + strand at 966.348 kb on + strand at 966.349 kb on - strand at 966.519 kb on + strand at 966.528 kb on + strand at 966.547 kb on - strand at 966.547 kb on - strand at 966.547 kb on - strand at 966.970 kb on + strand, within RR42_RS25085 at 967.044 kb on + strand, within RR42_RS25085 at 967.093 kb on + strand, within RR42_RS25085 at 967.093 kb on + strand, within RR42_RS25085 at 967.093 kb on + strand, within RR42_RS25085 at 967.093 kb on + strand, within RR42_RS25085 at 967.093 kb on + strand, within RR42_RS25085 at 967.093 kb on + strand, within RR42_RS25085 at 967.094 kb on - strand, within RR42_RS25085 at 967.094 kb on - strand, within RR42_RS25085 at 967.094 kb on - strand, within RR42_RS25085 at 967.096 kb on - strand, within RR42_RS25085 at 967.141 kb on + strand, within RR42_RS25085 at 967.141 kb on + strand, within RR42_RS25085 at 967.142 kb on - strand, within RR42_RS25085
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 963,988 + RR42_RS25075 0.57 -0.4 963,989 - RR42_RS25075 0.57 +0.3 964,002 - RR42_RS25075 0.58 +0.2 964,002 - RR42_RS25075 0.58 +0.5 964,002 - RR42_RS25075 0.58 -0.3 964,102 + RR42_RS25075 0.65 +0.2 964,102 + RR42_RS25075 0.65 -1.7 964,103 - RR42_RS25075 0.65 +0.2 964,151 - RR42_RS25075 0.68 +0.1 964,264 + RR42_RS25075 0.76 +0.3 964,264 + RR42_RS25075 0.76 -1.9 964,265 - RR42_RS25075 0.76 +0.1 964,369 + RR42_RS25075 0.84 +0.1 964,370 - RR42_RS25075 0.84 +0.7 964,484 + +0.4 964,484 + -0.5 964,484 + +1.9 964,485 - -0.5 964,808 + -1.9 964,829 + +0.8 964,830 - -0.2 964,999 - -2.7 965,184 + RR42_RS25080 0.20 -0.3 965,476 - RR42_RS25080 0.38 +2.5 965,476 - RR42_RS25080 0.38 -0.1 965,505 - RR42_RS25080 0.40 +0.5 965,547 - RR42_RS25080 0.43 +0.6 965,774 + RR42_RS25080 0.57 +0.2 965,775 - RR42_RS25080 0.57 +1.3 965,775 - RR42_RS25080 0.57 +1.0 966,187 - RR42_RS25080 0.83 -0.7 966,187 - RR42_RS25080 0.83 +0.6 966,233 + RR42_RS25080 0.85 -0.1 966,233 + RR42_RS25080 0.85 -0.2 966,233 + RR42_RS25080 0.85 +0.0 966,233 + RR42_RS25080 0.85 +0.5 966,234 - RR42_RS25080 0.85 +2.3 966,348 + +0.1 966,348 + +0.7 966,349 - -0.4 966,519 + +0.4 966,528 + +0.9 966,547 - -0.3 966,547 - -0.2 966,547 - +0.8 966,970 + RR42_RS25085 0.37 +0.4 967,044 + RR42_RS25085 0.45 -0.5 967,093 + RR42_RS25085 0.50 +0.3 967,093 + RR42_RS25085 0.50 -0.2 967,093 + RR42_RS25085 0.50 +0.6 967,093 + RR42_RS25085 0.50 +0.9 967,093 + RR42_RS25085 0.50 -0.5 967,093 + RR42_RS25085 0.50 +0.8 967,094 - RR42_RS25085 0.50 -0.8 967,094 - RR42_RS25085 0.50 -0.1 967,094 - RR42_RS25085 0.50 +0.4 967,096 - RR42_RS25085 0.51 -0.6 967,141 + RR42_RS25085 0.55 -0.4 967,141 + RR42_RS25085 0.55 +1.5 967,142 - RR42_RS25085 0.56 +0.5
Or see this region's nucleotide sequence