Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24380 and RR42_RS24385 are separated by 574 nucleotides RR42_RS24385 and RR42_RS24390 are separated by 37 nucleotides
RR42_RS24380: RR42_RS24380 - hypothetical protein, at 799,554 to 800,906
_RS24380
RR42_RS24385: RR42_RS24385 - hypothetical protein, at 801,481 to 803,106
_RS24385
RR42_RS24390: RR42_RS24390 - aldehyde dehydrogenase, at 803,144 to 804,577
_RS24390
Position (kb) 801
802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 800.508 kb on + strand, within RR42_RS24380 at 800.509 kb on - strand, within RR42_RS24380 at 800.509 kb on - strand, within RR42_RS24380 at 800.578 kb on - strand, within RR42_RS24380 at 800.578 kb on - strand, within RR42_RS24380 at 800.588 kb on + strand, within RR42_RS24380 at 800.588 kb on + strand, within RR42_RS24380 at 800.588 kb on + strand, within RR42_RS24380 at 800.607 kb on + strand, within RR42_RS24380 at 800.607 kb on + strand, within RR42_RS24380 at 800.607 kb on + strand, within RR42_RS24380 at 800.607 kb on + strand, within RR42_RS24380 at 800.608 kb on - strand, within RR42_RS24380 at 800.623 kb on + strand, within RR42_RS24380 at 800.642 kb on + strand, within RR42_RS24380 at 800.642 kb on + strand, within RR42_RS24380 at 800.642 kb on + strand, within RR42_RS24380 at 800.643 kb on - strand, within RR42_RS24380 at 800.643 kb on - strand, within RR42_RS24380 at 800.670 kb on + strand, within RR42_RS24380 at 800.670 kb on + strand, within RR42_RS24380 at 800.670 kb on + strand, within RR42_RS24380 at 800.671 kb on - strand, within RR42_RS24380 at 800.671 kb on - strand, within RR42_RS24380 at 800.676 kb on + strand, within RR42_RS24380 at 800.728 kb on - strand, within RR42_RS24380 at 800.728 kb on - strand, within RR42_RS24380 at 800.728 kb on - strand, within RR42_RS24380 at 800.739 kb on + strand, within RR42_RS24380 at 800.740 kb on - strand, within RR42_RS24380 at 800.740 kb on - strand, within RR42_RS24380 at 800.740 kb on - strand, within RR42_RS24380 at 800.740 kb on - strand, within RR42_RS24380 at 800.742 kb on - strand, within RR42_RS24380 at 800.799 kb on + strand at 800.799 kb on + strand at 800.799 kb on + strand at 800.896 kb on - strand at 800.963 kb on + strand at 800.964 kb on - strand at 800.989 kb on - strand at 801.045 kb on + strand at 801.045 kb on + strand at 801.046 kb on - strand at 801.046 kb on - strand at 801.046 kb on - strand at 801.071 kb on + strand at 801.072 kb on - strand at 801.072 kb on - strand at 801.085 kb on + strand at 801.085 kb on + strand at 801.085 kb on + strand at 801.086 kb on - strand at 801.086 kb on - strand at 801.092 kb on + strand at 801.117 kb on + strand at 801.117 kb on + strand at 801.214 kb on + strand at 801.214 kb on + strand at 801.214 kb on + strand at 801.214 kb on + strand at 801.214 kb on + strand at 801.215 kb on - strand at 801.215 kb on - strand at 801.231 kb on + strand at 801.232 kb on - strand at 801.232 kb on - strand at 801.255 kb on + strand at 801.255 kb on + strand at 801.340 kb on + strand at 801.340 kb on + strand at 801.370 kb on - strand at 801.409 kb on + strand at 801.410 kb on - strand at 801.441 kb on + strand at 801.442 kb on - strand at 801.461 kb on + strand at 801.461 kb on + strand at 801.461 kb on + strand at 801.501 kb on + strand at 801.515 kb on - strand at 801.524 kb on + strand at 801.525 kb on - strand at 801.728 kb on - strand, within RR42_RS24385 at 801.781 kb on + strand, within RR42_RS24385 at 801.781 kb on + strand, within RR42_RS24385 at 801.781 kb on + strand, within RR42_RS24385 at 801.781 kb on + strand, within RR42_RS24385 at 801.798 kb on + strand, within RR42_RS24385 at 801.805 kb on + strand, within RR42_RS24385 at 801.805 kb on + strand, within RR42_RS24385 at 801.855 kb on - strand, within RR42_RS24385 at 801.855 kb on - strand, within RR42_RS24385 at 801.855 kb on - strand, within RR42_RS24385 at 801.855 kb on - strand, within RR42_RS24385 at 801.855 kb on - strand, within RR42_RS24385 at 801.889 kb on + strand, within RR42_RS24385 at 801.889 kb on + strand, within RR42_RS24385 at 801.889 kb on + strand, within RR42_RS24385 at 801.890 kb on - strand, within RR42_RS24385 at 801.890 kb on - strand, within RR42_RS24385 at 801.890 kb on - strand, within RR42_RS24385 at 801.999 kb on + strand, within RR42_RS24385 at 801.999 kb on + strand, within RR42_RS24385 at 802.000 kb on - strand, within RR42_RS24385 at 802.048 kb on + strand, within RR42_RS24385 at 802.048 kb on + strand, within RR42_RS24385 at 802.048 kb on + strand, within RR42_RS24385 at 802.100 kb on - strand, within RR42_RS24385 at 802.100 kb on - strand, within RR42_RS24385 at 802.100 kb on - strand, within RR42_RS24385 at 802.103 kb on + strand, within RR42_RS24385 at 802.103 kb on + strand, within RR42_RS24385 at 802.103 kb on + strand, within RR42_RS24385 at 802.103 kb on + strand, within RR42_RS24385 at 802.103 kb on + strand, within RR42_RS24385 at 802.104 kb on - strand, within RR42_RS24385 at 802.123 kb on - strand, within RR42_RS24385 at 802.130 kb on + strand, within RR42_RS24385 at 802.131 kb on - strand, within RR42_RS24385 at 802.131 kb on - strand, within RR42_RS24385 at 802.184 kb on + strand, within RR42_RS24385 at 802.187 kb on + strand, within RR42_RS24385 at 802.188 kb on - strand, within RR42_RS24385 at 802.188 kb on - strand, within RR42_RS24385 at 802.188 kb on - strand, within RR42_RS24385 at 802.188 kb on - strand, within RR42_RS24385 at 802.198 kb on + strand, within RR42_RS24385 at 802.199 kb on - strand, within RR42_RS24385 at 802.202 kb on + strand, within RR42_RS24385 at 802.202 kb on + strand, within RR42_RS24385 at 802.202 kb on + strand, within RR42_RS24385 at 802.203 kb on - strand, within RR42_RS24385 at 802.284 kb on + strand, within RR42_RS24385 at 802.284 kb on + strand, within RR42_RS24385 at 802.284 kb on + strand, within RR42_RS24385 at 802.284 kb on + strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.358 kb on + strand, within RR42_RS24385 at 802.358 kb on + strand, within RR42_RS24385 at 802.400 kb on - strand, within RR42_RS24385 at 802.400 kb on - strand, within RR42_RS24385 at 802.400 kb on - strand, within RR42_RS24385 at 802.453 kb on + strand, within RR42_RS24385 at 802.472 kb on - strand, within RR42_RS24385 at 802.472 kb on - strand, within RR42_RS24385 at 802.539 kb on + strand, within RR42_RS24385 at 802.539 kb on + strand, within RR42_RS24385 at 802.560 kb on + strand, within RR42_RS24385 at 802.560 kb on + strand, within RR42_RS24385 at 802.561 kb on - strand, within RR42_RS24385 at 802.561 kb on - strand, within RR42_RS24385 at 802.561 kb on - strand, within RR42_RS24385 at 802.624 kb on - strand, within RR42_RS24385 at 802.732 kb on + strand, within RR42_RS24385 at 802.732 kb on + strand, within RR42_RS24385 at 802.732 kb on + strand, within RR42_RS24385 at 802.732 kb on + strand, within RR42_RS24385 at 802.733 kb on - strand, within RR42_RS24385 at 802.834 kb on + strand, within RR42_RS24385 at 802.835 kb on - strand, within RR42_RS24385 at 802.838 kb on + strand, within RR42_RS24385 at 802.967 kb on + strand at 802.967 kb on + strand at 802.982 kb on + strand at 802.991 kb on + strand at 802.992 kb on - strand at 803.119 kb on - strand at 803.129 kb on + strand at 803.130 kb on - strand at 803.142 kb on + strand at 803.143 kb on + strand at 803.144 kb on - strand at 803.144 kb on - strand at 803.149 kb on + strand at 803.149 kb on + strand at 803.149 kb on + strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.153 kb on + strand at 803.153 kb on + strand at 803.153 kb on + strand at 803.153 kb on + strand at 803.153 kb on + strand at 803.154 kb on - strand at 803.154 kb on - strand at 803.154 kb on - strand at 803.207 kb on + strand at 803.245 kb on + strand at 803.245 kb on + strand at 803.245 kb on + strand at 803.263 kb on + strand at 803.326 kb on + strand, within RR42_RS24390 at 803.327 kb on - strand, within RR42_RS24390 at 803.365 kb on - strand, within RR42_RS24390 at 803.461 kb on + strand, within RR42_RS24390 at 803.461 kb on + strand, within RR42_RS24390 at 803.461 kb on + strand, within RR42_RS24390 at 803.461 kb on + strand, within RR42_RS24390 at 803.471 kb on + strand, within RR42_RS24390 at 803.472 kb on - strand, within RR42_RS24390 at 803.546 kb on + strand, within RR42_RS24390 at 803.549 kb on - strand, within RR42_RS24390 at 803.565 kb on - strand, within RR42_RS24390 at 803.565 kb on - strand, within RR42_RS24390 at 803.565 kb on - strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.583 kb on + strand, within RR42_RS24390 at 803.583 kb on + strand, within RR42_RS24390 at 803.583 kb on + strand, within RR42_RS24390 at 803.584 kb on - strand, within RR42_RS24390 at 803.691 kb on + strand, within RR42_RS24390 at 803.708 kb on - strand, within RR42_RS24390 at 803.708 kb on - strand, within RR42_RS24390 at 803.872 kb on - strand, within RR42_RS24390 at 803.893 kb on - strand, within RR42_RS24390 at 803.893 kb on - strand, within RR42_RS24390 at 803.893 kb on - strand, within RR42_RS24390 at 803.893 kb on - strand, within RR42_RS24390 at 804.016 kb on - strand, within RR42_RS24390 at 804.071 kb on + strand, within RR42_RS24390 at 804.072 kb on - strand, within RR42_RS24390 at 804.072 kb on - strand, within RR42_RS24390 at 804.072 kb on - strand, within RR42_RS24390
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 800,508 + RR42_RS24380 0.71 -0.8 800,509 - RR42_RS24380 0.71 +0.9 800,509 - RR42_RS24380 0.71 +0.1 800,578 - RR42_RS24380 0.76 -0.1 800,578 - RR42_RS24380 0.76 -0.2 800,588 + RR42_RS24380 0.76 -0.1 800,588 + RR42_RS24380 0.76 -0.1 800,588 + RR42_RS24380 0.76 -0.1 800,607 + RR42_RS24380 0.78 -1.9 800,607 + RR42_RS24380 0.78 +0.5 800,607 + RR42_RS24380 0.78 +0.4 800,607 + RR42_RS24380 0.78 -0.9 800,608 - RR42_RS24380 0.78 -0.2 800,623 + RR42_RS24380 0.79 +0.0 800,642 + RR42_RS24380 0.80 -0.3 800,642 + RR42_RS24380 0.80 -0.7 800,642 + RR42_RS24380 0.80 +1.5 800,643 - RR42_RS24380 0.80 +0.1 800,643 - RR42_RS24380 0.80 -0.6 800,670 + RR42_RS24380 0.82 -0.4 800,670 + RR42_RS24380 0.82 +0.2 800,670 + RR42_RS24380 0.82 +0.2 800,671 - RR42_RS24380 0.83 -1.3 800,671 - RR42_RS24380 0.83 -0.8 800,676 + RR42_RS24380 0.83 -0.5 800,728 - RR42_RS24380 0.87 +0.8 800,728 - RR42_RS24380 0.87 -0.2 800,728 - RR42_RS24380 0.87 -0.5 800,739 + RR42_RS24380 0.88 +1.6 800,740 - RR42_RS24380 0.88 +0.7 800,740 - RR42_RS24380 0.88 -0.5 800,740 - RR42_RS24380 0.88 -0.9 800,740 - RR42_RS24380 0.88 +0.2 800,742 - RR42_RS24380 0.88 -0.3 800,799 + -0.2 800,799 + +0.3 800,799 + -0.3 800,896 - +0.4 800,963 + -0.4 800,964 - -1.0 800,989 - +0.4 801,045 + -1.5 801,045 + +2.1 801,046 - +0.5 801,046 - +0.4 801,046 - +0.1 801,071 + +0.3 801,072 - +1.5 801,072 - +0.1 801,085 + -0.6 801,085 + -0.3 801,085 + -0.1 801,086 - -0.6 801,086 - -0.2 801,092 + -1.2 801,117 + -0.1 801,117 + -0.1 801,214 + +1.4 801,214 + +0.2 801,214 + -1.5 801,214 + +0.7 801,214 + -0.1 801,215 - -0.1 801,215 - -1.6 801,231 + +3.2 801,232 - -0.2 801,232 - -0.7 801,255 + +0.3 801,255 + -2.1 801,340 + -0.2 801,340 + +1.1 801,370 - +0.5 801,409 + -2.3 801,410 - -0.1 801,441 + -0.3 801,442 - -0.4 801,461 + +0.9 801,461 + -1.1 801,461 + -0.4 801,501 + -0.1 801,515 - +0.4 801,524 + -0.1 801,525 - +0.3 801,728 - RR42_RS24385 0.15 -0.6 801,781 + RR42_RS24385 0.18 -0.3 801,781 + RR42_RS24385 0.18 +0.2 801,781 + RR42_RS24385 0.18 -1.8 801,781 + RR42_RS24385 0.18 +0.3 801,798 + RR42_RS24385 0.19 +0.8 801,805 + RR42_RS24385 0.20 +1.3 801,805 + RR42_RS24385 0.20 -0.1 801,855 - RR42_RS24385 0.23 +0.3 801,855 - RR42_RS24385 0.23 -1.9 801,855 - RR42_RS24385 0.23 -0.2 801,855 - RR42_RS24385 0.23 -0.1 801,855 - RR42_RS24385 0.23 +0.5 801,889 + RR42_RS24385 0.25 -0.6 801,889 + RR42_RS24385 0.25 -0.5 801,889 + RR42_RS24385 0.25 -0.1 801,890 - RR42_RS24385 0.25 +0.9 801,890 - RR42_RS24385 0.25 -0.3 801,890 - RR42_RS24385 0.25 -1.4 801,999 + RR42_RS24385 0.32 +0.5 801,999 + RR42_RS24385 0.32 +0.6 802,000 - RR42_RS24385 0.32 +0.1 802,048 + RR42_RS24385 0.35 -0.4 802,048 + RR42_RS24385 0.35 -0.6 802,048 + RR42_RS24385 0.35 -0.5 802,100 - RR42_RS24385 0.38 -1.2 802,100 - RR42_RS24385 0.38 +0.8 802,100 - RR42_RS24385 0.38 -1.5 802,103 + RR42_RS24385 0.38 -0.1 802,103 + RR42_RS24385 0.38 +2.1 802,103 + RR42_RS24385 0.38 +0.9 802,103 + RR42_RS24385 0.38 +1.4 802,103 + RR42_RS24385 0.38 -0.8 802,104 - RR42_RS24385 0.38 -1.3 802,123 - RR42_RS24385 0.39 -0.7 802,130 + RR42_RS24385 0.40 -0.1 802,131 - RR42_RS24385 0.40 -0.1 802,131 - RR42_RS24385 0.40 +0.9 802,184 + RR42_RS24385 0.43 -0.3 802,187 + RR42_RS24385 0.43 +0.1 802,188 - RR42_RS24385 0.43 -0.4 802,188 - RR42_RS24385 0.43 -0.3 802,188 - RR42_RS24385 0.43 +0.3 802,188 - RR42_RS24385 0.43 -1.1 802,198 + RR42_RS24385 0.44 -2.7 802,199 - RR42_RS24385 0.44 -0.4 802,202 + RR42_RS24385 0.44 +0.3 802,202 + RR42_RS24385 0.44 -0.5 802,202 + RR42_RS24385 0.44 -2.0 802,203 - RR42_RS24385 0.44 +0.7 802,284 + RR42_RS24385 0.49 -0.1 802,284 + RR42_RS24385 0.49 +0.9 802,284 + RR42_RS24385 0.49 -2.3 802,284 + RR42_RS24385 0.49 -0.5 802,285 - RR42_RS24385 0.49 -1.6 802,285 - RR42_RS24385 0.49 +0.1 802,285 - RR42_RS24385 0.49 -0.6 802,285 - RR42_RS24385 0.49 +0.8 802,285 - RR42_RS24385 0.49 +1.0 802,358 + RR42_RS24385 0.54 -0.5 802,358 + RR42_RS24385 0.54 -0.4 802,400 - RR42_RS24385 0.57 +0.3 802,400 - RR42_RS24385 0.57 -0.5 802,400 - RR42_RS24385 0.57 -1.1 802,453 + RR42_RS24385 0.60 -0.8 802,472 - RR42_RS24385 0.61 -0.3 802,472 - RR42_RS24385 0.61 -1.3 802,539 + RR42_RS24385 0.65 -1.5 802,539 + RR42_RS24385 0.65 +0.5 802,560 + RR42_RS24385 0.66 +0.4 802,560 + RR42_RS24385 0.66 -1.5 802,561 - RR42_RS24385 0.66 -0.1 802,561 - RR42_RS24385 0.66 +2.1 802,561 - RR42_RS24385 0.66 -0.2 802,624 - RR42_RS24385 0.70 +0.3 802,732 + RR42_RS24385 0.77 -1.4 802,732 + RR42_RS24385 0.77 -0.7 802,732 + RR42_RS24385 0.77 -1.3 802,732 + RR42_RS24385 0.77 -0.3 802,733 - RR42_RS24385 0.77 +0.0 802,834 + RR42_RS24385 0.83 +1.0 802,835 - RR42_RS24385 0.83 -0.8 802,838 + RR42_RS24385 0.83 +2.1 802,967 + -2.0 802,967 + +0.8 802,982 + +0.2 802,991 + +0.1 802,992 - +1.4 803,119 - -0.2 803,129 + +1.0 803,130 - +0.8 803,142 + +0.9 803,143 + -0.5 803,144 - -0.0 803,144 - +0.6 803,149 + +0.4 803,149 + -0.1 803,149 + +0.5 803,150 - +0.2 803,150 - +1.1 803,150 - -1.7 803,150 - -0.6 803,150 - -0.3 803,150 - +0.6 803,153 + -0.2 803,153 + -2.2 803,153 + -0.6 803,153 + +0.3 803,153 + +0.3 803,154 - -1.3 803,154 - -1.3 803,154 - +1.4 803,207 + +0.3 803,245 + -0.1 803,245 + +0.2 803,245 + -0.1 803,263 + -1.1 803,326 + RR42_RS24390 0.13 -0.5 803,327 - RR42_RS24390 0.13 +1.0 803,365 - RR42_RS24390 0.15 -0.5 803,461 + RR42_RS24390 0.22 +0.5 803,461 + RR42_RS24390 0.22 +0.1 803,461 + RR42_RS24390 0.22 +0.8 803,461 + RR42_RS24390 0.22 -0.2 803,471 + RR42_RS24390 0.23 +0.4 803,472 - RR42_RS24390 0.23 -0.9 803,546 + RR42_RS24390 0.28 -1.8 803,549 - RR42_RS24390 0.28 +0.4 803,565 - RR42_RS24390 0.29 +0.9 803,565 - RR42_RS24390 0.29 -0.2 803,565 - RR42_RS24390 0.29 -0.6 803,581 + RR42_RS24390 0.30 -0.9 803,581 + RR42_RS24390 0.30 -0.2 803,581 + RR42_RS24390 0.30 +1.5 803,581 + RR42_RS24390 0.30 -0.6 803,581 + RR42_RS24390 0.30 -0.1 803,582 - RR42_RS24390 0.31 -1.6 803,582 - RR42_RS24390 0.31 +0.5 803,582 - RR42_RS24390 0.31 +0.6 803,582 - RR42_RS24390 0.31 -0.4 803,582 - RR42_RS24390 0.31 +0.4 803,583 + RR42_RS24390 0.31 +0.0 803,583 + RR42_RS24390 0.31 +0.5 803,583 + RR42_RS24390 0.31 -1.5 803,584 - RR42_RS24390 0.31 -0.4 803,691 + RR42_RS24390 0.38 -0.0 803,708 - RR42_RS24390 0.39 +0.1 803,708 - RR42_RS24390 0.39 -0.6 803,872 - RR42_RS24390 0.51 -0.5 803,893 - RR42_RS24390 0.52 -2.6 803,893 - RR42_RS24390 0.52 +0.5 803,893 - RR42_RS24390 0.52 +0.2 803,893 - RR42_RS24390 0.52 +0.1 804,016 - RR42_RS24390 0.61 -0.5 804,071 + RR42_RS24390 0.65 -0.8 804,072 - RR42_RS24390 0.65 +0.8 804,072 - RR42_RS24390 0.65 +1.0 804,072 - RR42_RS24390 0.65 -0.4
Or see this region's nucleotide sequence