Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23645 and RR42_RS23650 are separated by 84 nucleotides RR42_RS23650 and RR42_RS23655 are separated by 143 nucleotides
RR42_RS23645: RR42_RS23645 - flagellar hook protein, at 630,084 to 631,514
_RS23645
RR42_RS23650: RR42_RS23650 - flagellar protein, at 631,599 to 631,976
_RS23650
RR42_RS23655: RR42_RS23655 - flagellin, at 632,120 to 633,448
_RS23655
Position (kb) 631
632 Strain fitness (log2 ratio) -2
-1
0
1 at 630.634 kb on + strand, within RR42_RS23645 at 630.850 kb on + strand, within RR42_RS23645 at 630.850 kb on + strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.959 kb on - strand, within RR42_RS23645 at 631.043 kb on + strand, within RR42_RS23645 at 631.043 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.238 kb on - strand, within RR42_RS23645 at 631.238 kb on - strand, within RR42_RS23645 at 631.238 kb on - strand, within RR42_RS23645 at 631.257 kb on - strand, within RR42_RS23645 at 631.315 kb on + strand, within RR42_RS23645 at 631.316 kb on - strand, within RR42_RS23645 at 631.316 kb on - strand, within RR42_RS23645 at 631.384 kb on + strand at 631.384 kb on + strand at 631.385 kb on - strand at 631.385 kb on - strand at 631.563 kb on + strand at 631.574 kb on + strand at 631.574 kb on + strand at 631.575 kb on - strand at 631.575 kb on - strand at 631.685 kb on + strand, within RR42_RS23650 at 631.685 kb on + strand, within RR42_RS23650 at 631.686 kb on - strand, within RR42_RS23650 at 632.122 kb on - strand at 632.179 kb on + strand at 632.179 kb on + strand at 632.180 kb on - strand at 632.180 kb on - strand at 632.180 kb on - strand at 632.532 kb on + strand, within RR42_RS23655 at 632.532 kb on + strand, within RR42_RS23655 at 632.532 kb on + strand, within RR42_RS23655 at 632.532 kb on + strand, within RR42_RS23655 at 632.533 kb on - strand, within RR42_RS23655 at 632.533 kb on - strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.734 kb on - strand, within RR42_RS23655
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 630,634 + RR42_RS23645 0.38 +0.9 630,850 + RR42_RS23645 0.54 -0.4 630,850 + RR42_RS23645 0.54 +0.4 630,851 - RR42_RS23645 0.54 +0.3 630,851 - RR42_RS23645 0.54 -1.0 630,851 - RR42_RS23645 0.54 +0.3 630,851 - RR42_RS23645 0.54 -0.5 630,851 - RR42_RS23645 0.54 -0.6 630,851 - RR42_RS23645 0.54 -0.7 630,959 - RR42_RS23645 0.61 +0.5 631,043 + RR42_RS23645 0.67 -1.1 631,043 + RR42_RS23645 0.67 -0.5 631,237 + RR42_RS23645 0.81 +0.2 631,237 + RR42_RS23645 0.81 -0.8 631,237 + RR42_RS23645 0.81 +0.1 631,237 + RR42_RS23645 0.81 -1.6 631,237 + RR42_RS23645 0.81 +0.2 631,237 + RR42_RS23645 0.81 +0.8 631,238 - RR42_RS23645 0.81 +0.4 631,238 - RR42_RS23645 0.81 -0.7 631,238 - RR42_RS23645 0.81 +1.0 631,257 - RR42_RS23645 0.82 -0.1 631,315 + RR42_RS23645 0.86 -0.3 631,316 - RR42_RS23645 0.86 +0.5 631,316 - RR42_RS23645 0.86 -1.1 631,384 + +0.7 631,384 + +0.9 631,385 - -0.9 631,385 - +0.8 631,563 + +1.7 631,574 + -0.4 631,574 + +1.1 631,575 - +0.5 631,575 - +0.1 631,685 + RR42_RS23650 0.23 -1.8 631,685 + RR42_RS23650 0.23 -0.6 631,686 - RR42_RS23650 0.23 +0.0 632,122 - +0.2 632,179 + -0.8 632,179 + +1.5 632,180 - +0.2 632,180 - +0.1 632,180 - -1.3 632,532 + RR42_RS23655 0.31 +0.4 632,532 + RR42_RS23655 0.31 -1.1 632,532 + RR42_RS23655 0.31 -0.5 632,532 + RR42_RS23655 0.31 +0.8 632,533 - RR42_RS23655 0.31 -0.1 632,533 - RR42_RS23655 0.31 -0.3 632,706 + RR42_RS23655 0.44 -0.9 632,706 + RR42_RS23655 0.44 +1.5 632,706 + RR42_RS23655 0.44 +0.4 632,706 + RR42_RS23655 0.44 +0.2 632,706 + RR42_RS23655 0.44 +1.2 632,707 - RR42_RS23655 0.44 -0.2 632,707 - RR42_RS23655 0.44 +0.4 632,707 - RR42_RS23655 0.44 -0.7 632,707 - RR42_RS23655 0.44 -0.1 632,733 + RR42_RS23655 0.46 -0.1 632,733 + RR42_RS23655 0.46 -0.2 632,733 + RR42_RS23655 0.46 -1.4 632,733 + RR42_RS23655 0.46 -1.3 632,733 + RR42_RS23655 0.46 +1.0 632,733 + RR42_RS23655 0.46 +0.9 632,734 - RR42_RS23655 0.46 -0.9
Or see this region's nucleotide sequence