Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23080 and RR42_RS23085 are separated by 159 nucleotides RR42_RS23085 and RR42_RS23090 are separated by 33 nucleotides
RR42_RS23080: RR42_RS23080 - LysR family transcriptional regulator, at 512,656 to 513,591
_RS23080
RR42_RS23085: RR42_RS23085 - cytochrome C biogenesis protein CcdA, at 513,751 to 514,677
_RS23085
RR42_RS23090: RR42_RS23090 - 2,5-dioxovalerate dehydrogenase, at 514,711 to 516,312
_RS23090
Position (kb) 513
514
515 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 512.836 kb on + strand, within RR42_RS23080 at 512.837 kb on - strand, within RR42_RS23080 at 513.083 kb on + strand, within RR42_RS23080 at 513.083 kb on + strand, within RR42_RS23080 at 513.084 kb on - strand, within RR42_RS23080 at 513.090 kb on - strand, within RR42_RS23080 at 513.591 kb on + strand at 513.592 kb on - strand at 513.676 kb on - strand at 513.677 kb on + strand at 513.677 kb on + strand at 513.677 kb on + strand at 513.677 kb on + strand at 513.678 kb on - strand at 513.678 kb on - strand at 513.701 kb on + strand at 513.701 kb on + strand at 513.701 kb on + strand at 513.702 kb on - strand at 513.760 kb on - strand at 513.773 kb on - strand at 513.773 kb on - strand at 513.783 kb on - strand at 514.123 kb on + strand, within RR42_RS23085 at 514.123 kb on + strand, within RR42_RS23085 at 514.124 kb on - strand, within RR42_RS23085 at 514.124 kb on - strand, within RR42_RS23085 at 514.124 kb on - strand, within RR42_RS23085 at 514.158 kb on + strand, within RR42_RS23085 at 514.253 kb on - strand, within RR42_RS23085 at 514.284 kb on - strand, within RR42_RS23085 at 514.478 kb on - strand, within RR42_RS23085 at 514.478 kb on - strand, within RR42_RS23085 at 514.504 kb on + strand, within RR42_RS23085 at 514.504 kb on + strand, within RR42_RS23085 at 514.504 kb on + strand, within RR42_RS23085 at 514.505 kb on - strand, within RR42_RS23085 at 514.505 kb on - strand, within RR42_RS23085 at 515.018 kb on + strand, within RR42_RS23090 at 515.284 kb on - strand, within RR42_RS23090 at 515.497 kb on + strand, within RR42_RS23090
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 512,836 + RR42_RS23080 0.19 +2.9 512,837 - RR42_RS23080 0.19 +0.6 513,083 + RR42_RS23080 0.46 -0.3 513,083 + RR42_RS23080 0.46 +0.6 513,084 - RR42_RS23080 0.46 -0.8 513,090 - RR42_RS23080 0.46 +0.3 513,591 + +1.6 513,592 - -1.6 513,676 - +0.6 513,677 + +1.6 513,677 + +0.1 513,677 + +1.0 513,677 + +0.3 513,678 - -0.8 513,678 - -0.1 513,701 + +0.3 513,701 + +2.6 513,701 + -1.9 513,702 - +0.0 513,760 - -0.2 513,773 - -0.3 513,773 - +1.1 513,783 - -0.7 514,123 + RR42_RS23085 0.40 -1.4 514,123 + RR42_RS23085 0.40 +0.2 514,124 - RR42_RS23085 0.40 +0.9 514,124 - RR42_RS23085 0.40 -1.2 514,124 - RR42_RS23085 0.40 -0.4 514,158 + RR42_RS23085 0.44 -0.7 514,253 - RR42_RS23085 0.54 +1.1 514,284 - RR42_RS23085 0.57 +0.3 514,478 - RR42_RS23085 0.78 -0.2 514,478 - RR42_RS23085 0.78 -0.1 514,504 + RR42_RS23085 0.81 -1.2 514,504 + RR42_RS23085 0.81 -0.9 514,504 + RR42_RS23085 0.81 -1.2 514,505 - RR42_RS23085 0.81 -0.8 514,505 - RR42_RS23085 0.81 +0.6 515,018 + RR42_RS23090 0.19 +0.3 515,284 - RR42_RS23090 0.36 +2.0 515,497 + RR42_RS23090 0.49 +0.2
Or see this region's nucleotide sequence