Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22720

Experiment: Valeric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS22715 and RR42_RS22720 overlap by 17 nucleotidesRR42_RS22720 and RR42_RS22725 are separated by 800 nucleotides RR42_RS22715: RR42_RS22715 - AMP-binding protein, at 429,967 to 431,616 _RS22715 RR42_RS22720: RR42_RS22720 - hypothetical protein, at 431,600 to 431,977 _RS22720 RR42_RS22725: RR42_RS22725 - phosphatidylethanolamine-binding protein, at 432,778 to 433,332 _RS22725 Position (kb) 431 432Strain fitness (log2 ratio) -2 -1 0 1 2 3at 430.604 kb on + strand, within RR42_RS22715at 430.832 kb on + strand, within RR42_RS22715at 430.877 kb on + strand, within RR42_RS22715at 430.877 kb on + strand, within RR42_RS22715at 430.878 kb on - strand, within RR42_RS22715at 430.880 kb on + strand, within RR42_RS22715at 430.880 kb on + strand, within RR42_RS22715at 430.880 kb on + strand, within RR42_RS22715at 430.880 kb on + strand, within RR42_RS22715at 430.881 kb on - strand, within RR42_RS22715at 430.881 kb on - strand, within RR42_RS22715at 430.889 kb on + strand, within RR42_RS22715at 430.890 kb on - strand, within RR42_RS22715at 430.956 kb on + strand, within RR42_RS22715at 430.956 kb on + strand, within RR42_RS22715at 430.956 kb on + strand, within RR42_RS22715at 430.957 kb on - strand, within RR42_RS22715at 431.161 kb on + strand, within RR42_RS22715at 431.161 kb on + strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.179 kb on + strand, within RR42_RS22715at 431.179 kb on + strand, within RR42_RS22715at 431.179 kb on + strand, within RR42_RS22715at 431.179 kb on + strand, within RR42_RS22715at 431.180 kb on - strand, within RR42_RS22715at 431.180 kb on - strand, within RR42_RS22715at 431.442 kb on + strand, within RR42_RS22715at 431.442 kb on + strand, within RR42_RS22715at 431.442 kb on + strand, within RR42_RS22715at 431.443 kb on - strand, within RR42_RS22715at 431.443 kb on - strand, within RR42_RS22715at 431.443 kb on - strand, within RR42_RS22715at 431.443 kb on - strand, within RR42_RS22715at 431.444 kb on + strand, within RR42_RS22715at 431.444 kb on + strand, within RR42_RS22715at 431.445 kb on - strand, within RR42_RS22715at 431.637 kb on + strandat 431.638 kb on - strand, within RR42_RS22720at 432.013 kb on + strandat 432.031 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.035 kb on - strandat 432.035 kb on - strandat 432.035 kb on - strandat 432.035 kb on - strandat 432.035 kb on - strandat 432.046 kb on + strandat 432.095 kb on - strandat 432.095 kb on - strandat 432.125 kb on - strandat 432.125 kb on - strandat 432.148 kb on + strandat 432.148 kb on + strandat 432.149 kb on - strandat 432.193 kb on + strandat 432.194 kb on - strandat 432.300 kb on - strandat 432.494 kb on + strandat 432.495 kb on - strandat 432.495 kb on - strandat 432.536 kb on + strandat 432.536 kb on + strandat 432.613 kb on + strandat 432.614 kb on - strandat 432.626 kb on - strandat 432.631 kb on + strandat 432.650 kb on + strandat 432.651 kb on - strandat 432.651 kb on - strandat 432.684 kb on - strandat 432.715 kb on + strandat 432.715 kb on + strandat 432.715 kb on + strandat 432.744 kb on + strandat 432.847 kb on + strand, within RR42_RS22725at 432.847 kb on + strand, within RR42_RS22725at 432.847 kb on + strand, within RR42_RS22725at 432.847 kb on + strand, within RR42_RS22725at 432.910 kb on + strand, within RR42_RS22725at 432.910 kb on + strand, within RR42_RS22725at 432.921 kb on + strand, within RR42_RS22725at 432.921 kb on + strand, within RR42_RS22725at 432.921 kb on + strand, within RR42_RS22725at 432.921 kb on + strand, within RR42_RS22725at 432.922 kb on - strand, within RR42_RS22725at 432.922 kb on - strand, within RR42_RS22725at 432.922 kb on - strand, within RR42_RS22725

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
remove
430,604 + RR42_RS22715 0.39 +0.8
430,832 + RR42_RS22715 0.52 +0.1
430,877 + RR42_RS22715 0.55 -0.3
430,877 + RR42_RS22715 0.55 -0.4
430,878 - RR42_RS22715 0.55 -0.7
430,880 + RR42_RS22715 0.55 +0.1
430,880 + RR42_RS22715 0.55 -1.1
430,880 + RR42_RS22715 0.55 -0.2
430,880 + RR42_RS22715 0.55 +0.3
430,881 - RR42_RS22715 0.55 -0.4
430,881 - RR42_RS22715 0.55 -0.0
430,889 + RR42_RS22715 0.56 +0.3
430,890 - RR42_RS22715 0.56 -0.5
430,956 + RR42_RS22715 0.60 -1.0
430,956 + RR42_RS22715 0.60 -0.5
430,956 + RR42_RS22715 0.60 -0.7
430,957 - RR42_RS22715 0.60 +0.2
431,161 + RR42_RS22715 0.72 -1.1
431,161 + RR42_RS22715 0.72 -0.0
431,162 - RR42_RS22715 0.72 -1.3
431,162 - RR42_RS22715 0.72 -0.4
431,162 - RR42_RS22715 0.72 -0.8
431,162 - RR42_RS22715 0.72 +0.1
431,162 - RR42_RS22715 0.72 -0.5
431,162 - RR42_RS22715 0.72 +0.6
431,179 + RR42_RS22715 0.73 -0.7
431,179 + RR42_RS22715 0.73 -0.3
431,179 + RR42_RS22715 0.73 -0.4
431,179 + RR42_RS22715 0.73 +0.4
431,180 - RR42_RS22715 0.74 +0.3
431,180 - RR42_RS22715 0.74 -1.0
431,442 + RR42_RS22715 0.89 -0.0
431,442 + RR42_RS22715 0.89 +1.4
431,442 + RR42_RS22715 0.89 +0.2
431,443 - RR42_RS22715 0.89 -0.3
431,443 - RR42_RS22715 0.89 -2.2
431,443 - RR42_RS22715 0.89 +0.3
431,443 - RR42_RS22715 0.89 -0.3
431,444 + RR42_RS22715 0.90 -1.1
431,444 + RR42_RS22715 0.90 -1.4
431,445 - RR42_RS22715 0.90 -0.4
431,637 + +0.6
431,638 - RR42_RS22720 0.10 +1.3
432,013 + -0.5
432,031 + -0.2
432,034 + -0.6
432,034 + +0.6
432,034 + +0.1
432,034 + -0.0
432,034 + +2.8
432,034 + +0.2
432,034 + +1.6
432,034 + +0.5
432,035 - +0.9
432,035 - -0.6
432,035 - +0.3
432,035 - -0.3
432,035 - -0.0
432,046 + +0.6
432,095 - +0.1
432,095 - -2.0
432,125 - +2.6
432,125 - -0.6
432,148 + -0.8
432,148 + +0.2
432,149 - -0.3
432,193 + -0.0
432,194 - +1.3
432,300 - -0.2
432,494 + -0.6
432,495 - +0.7
432,495 - -1.1
432,536 + -0.5
432,536 + -0.4
432,613 + -0.4
432,614 - +0.6
432,626 - -0.9
432,631 + -0.1
432,650 + -1.3
432,651 - -1.0
432,651 - +0.5
432,684 - -0.9
432,715 + +0.0
432,715 + -0.9
432,715 + -0.4
432,744 + +0.4
432,847 + RR42_RS22725 0.12 -1.2
432,847 + RR42_RS22725 0.12 +0.2
432,847 + RR42_RS22725 0.12 +0.1
432,847 + RR42_RS22725 0.12 -0.3
432,910 + RR42_RS22725 0.24 -0.3
432,910 + RR42_RS22725 0.24 +0.7
432,921 + RR42_RS22725 0.26 -0.8
432,921 + RR42_RS22725 0.26 -1.1
432,921 + RR42_RS22725 0.26 -0.7
432,921 + RR42_RS22725 0.26 +0.5
432,922 - RR42_RS22725 0.26 +0.2
432,922 - RR42_RS22725 0.26 -1.6
432,922 - RR42_RS22725 0.26 -1.4

Or see this region's nucleotide sequence