Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21005 and RR42_RS21010 are separated by 46 nucleotides RR42_RS21010 and RR42_RS21015 are separated by 94 nucleotides
RR42_RS21005: RR42_RS21005 - GDP-L-fucose synthase, at 40,805 to 41,797
_RS21005
RR42_RS21010: RR42_RS21010 - GDP-mannose 4,6-dehydratase, at 41,844 to 42,956
_RS21010
RR42_RS21015: RR42_RS21015 - mannose-1-phosphate guanyltransferase, at 43,051 to 44,475
_RS21015
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1 at 41.097 kb on + strand, within RR42_RS21005 at 41.274 kb on + strand, within RR42_RS21005 at 41.274 kb on + strand, within RR42_RS21005 at 41.343 kb on + strand, within RR42_RS21005 at 41.386 kb on - strand, within RR42_RS21005 at 41.477 kb on + strand, within RR42_RS21005 at 41.478 kb on - strand, within RR42_RS21005 at 41.613 kb on + strand, within RR42_RS21005 at 41.613 kb on + strand, within RR42_RS21005 at 41.614 kb on - strand, within RR42_RS21005 at 42.226 kb on + strand, within RR42_RS21010 at 42.227 kb on - strand, within RR42_RS21010 at 42.227 kb on - strand, within RR42_RS21010 at 42.322 kb on + strand, within RR42_RS21010 at 42.322 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.440 kb on - strand, within RR42_RS21010 at 42.440 kb on - strand, within RR42_RS21010 at 42.460 kb on + strand, within RR42_RS21010 at 42.485 kb on - strand, within RR42_RS21010 at 42.502 kb on + strand, within RR42_RS21010 at 42.502 kb on + strand at 42.509 kb on + strand, within RR42_RS21010 at 42.586 kb on + strand, within RR42_RS21010 at 42.586 kb on + strand, within RR42_RS21010 at 42.670 kb on + strand, within RR42_RS21010 at 42.671 kb on - strand, within RR42_RS21010 at 42.830 kb on - strand, within RR42_RS21010 at 42.922 kb on + strand at 42.923 kb on - strand at 42.941 kb on + strand at 43.064 kb on + strand at 43.064 kb on + strand at 43.068 kb on + strand at 43.069 kb on - strand at 43.104 kb on - strand at 43.104 kb on - strand at 43.104 kb on - strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.211 kb on + strand, within RR42_RS21015 at 43.334 kb on + strand, within RR42_RS21015 at 43.382 kb on - strand, within RR42_RS21015 at 43.382 kb on - strand, within RR42_RS21015 at 43.382 kb on - strand, within RR42_RS21015 at 43.712 kb on + strand, within RR42_RS21015 at 43.850 kb on + strand, within RR42_RS21015 at 43.851 kb on - strand, within RR42_RS21015
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 41,097 + RR42_RS21005 0.29 +0.2 41,274 + RR42_RS21005 0.47 +0.5 41,274 + RR42_RS21005 0.47 -0.9 41,343 + RR42_RS21005 0.54 -0.2 41,386 - RR42_RS21005 0.59 -0.2 41,477 + RR42_RS21005 0.68 -0.4 41,478 - RR42_RS21005 0.68 -1.4 41,613 + RR42_RS21005 0.81 -0.2 41,613 + RR42_RS21005 0.81 -1.7 41,614 - RR42_RS21005 0.81 +0.3 42,226 + RR42_RS21010 0.34 +0.6 42,227 - RR42_RS21010 0.34 +0.6 42,227 - RR42_RS21010 0.34 +0.0 42,322 + RR42_RS21010 0.43 -2.4 42,322 + RR42_RS21010 0.43 +1.6 42,439 + RR42_RS21010 0.53 +1.1 42,439 + RR42_RS21010 0.53 -0.1 42,439 + RR42_RS21010 0.53 +0.5 42,439 + RR42_RS21010 0.53 +1.6 42,440 - RR42_RS21010 0.54 +0.2 42,440 - RR42_RS21010 0.54 +0.5 42,460 + RR42_RS21010 0.55 -0.3 42,485 - RR42_RS21010 0.58 -0.7 42,502 + RR42_RS21010 0.59 +0.9 42,502 + +1.6 42,509 + RR42_RS21010 0.60 -0.9 42,586 + RR42_RS21010 0.67 +0.3 42,586 + RR42_RS21010 0.67 +1.6 42,670 + RR42_RS21010 0.74 +0.4 42,671 - RR42_RS21010 0.74 -0.4 42,830 - RR42_RS21010 0.89 -0.8 42,922 + +1.3 42,923 - +0.2 42,941 + +0.4 43,064 + +0.2 43,064 + +0.5 43,068 + -0.5 43,069 - +0.4 43,104 - -0.6 43,104 - +0.6 43,104 - +0.6 43,184 + +0.7 43,184 + -0.3 43,184 + +0.2 43,184 + +0.5 43,184 + -0.1 43,185 - +0.2 43,185 - -0.2 43,185 - +0.9 43,185 - -0.5 43,211 + RR42_RS21015 0.11 -0.7 43,334 + RR42_RS21015 0.20 +0.4 43,382 - RR42_RS21015 0.23 +1.4 43,382 - RR42_RS21015 0.23 -0.7 43,382 - RR42_RS21015 0.23 -0.1 43,712 + RR42_RS21015 0.46 -0.5 43,850 + RR42_RS21015 0.56 -0.3 43,851 - RR42_RS21015 0.56 -1.4
Or see this region's nucleotide sequence