Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20865

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20860 and RR42_RS20865 are separated by 2 nucleotidesRR42_RS20865 and RR42_RS20870 are separated by 178 nucleotides RR42_RS20860: RR42_RS20860 - cobyrinic acid a,c-diamide synthase, at 3,293 to 3,952 _RS20860 RR42_RS20865: RR42_RS20865 - chromosome partitioning protein ParB, at 3,955 to 4,968 _RS20865 RR42_RS20870: RR42_RS20870 - integrase, at 5,147 to 6,730 _RS20870 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1at 2.956 kb on + strandat 2.956 kb on + strandat 2.957 kb on - strandat 2.957 kb on - strandat 2.976 kb on - strandat 2.995 kb on + strandat 2.995 kb on + strandat 3.006 kb on - strandat 3.006 kb on - strandat 3.064 kb on + strandat 3.065 kb on - strandat 3.078 kb on - strandat 3.078 kb on - strandat 3.118 kb on + strandat 3.189 kb on + strandat 3.930 kb on + strandat 4.969 kb on + strandat 4.970 kb on - strandat 4.970 kb on - strandat 4.984 kb on + strandat 4.985 kb on - strandat 4.985 kb on - strandat 4.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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2,956 + -1.6
2,956 + -0.3
2,957 - -0.2
2,957 - -0.8
2,976 - -0.5
2,995 + -0.7
2,995 + -0.0
3,006 - -0.3
3,006 - +0.5
3,064 + -2.1
3,065 - +0.4
3,078 - +0.8
3,078 - -0.1
3,118 + +0.5
3,189 + -0.2
3,930 + +0.8
4,969 + -0.0
4,970 - -0.4
4,970 - -0.4
4,984 + -0.6
4,985 - -0.4
4,985 - -1.8
4,985 - +0.3

Or see this region's nucleotide sequence