Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20800 and RR42_RS20805 are separated by 49 nucleotides RR42_RS20805 and RR42_RS20810 are separated by 128 nucleotides
RR42_RS20800: RR42_RS20800 - AraC family transcriptional regulator, at 4,514,562 to 4,515,392
_RS20800
RR42_RS20805: RR42_RS20805 - tRNA modification GTPase TrmE, at 4,515,442 to 4,516,896
_RS20805
RR42_RS20810: RR42_RS20810 - hypothetical protein, at 4,517,025 to 4,517,795
_RS20810
Position (kb) 4515
4516
4517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4514.586 kb on + strand at 4514.652 kb on + strand, within RR42_RS20800 at 4514.652 kb on + strand, within RR42_RS20800 at 4514.685 kb on + strand, within RR42_RS20800 at 4514.686 kb on - strand, within RR42_RS20800 at 4514.740 kb on + strand, within RR42_RS20800 at 4514.934 kb on + strand, within RR42_RS20800 at 4514.934 kb on + strand, within RR42_RS20800 at 4514.934 kb on + strand, within RR42_RS20800 at 4514.934 kb on + strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.997 kb on + strand, within RR42_RS20800 at 4515.088 kb on - strand, within RR42_RS20800 at 4515.088 kb on - strand, within RR42_RS20800 at 4515.222 kb on + strand, within RR42_RS20800 at 4515.222 kb on + strand, within RR42_RS20800 at 4515.234 kb on + strand, within RR42_RS20800 at 4515.234 kb on + strand, within RR42_RS20800 at 4515.234 kb on + strand, within RR42_RS20800 at 4515.234 kb on + strand, within RR42_RS20800 at 4515.235 kb on - strand, within RR42_RS20800 at 4515.255 kb on + strand, within RR42_RS20800 at 4515.255 kb on + strand, within RR42_RS20800 at 4515.255 kb on + strand, within RR42_RS20800 at 4515.256 kb on - strand, within RR42_RS20800 at 4515.256 kb on - strand, within RR42_RS20800 at 4515.256 kb on - strand, within RR42_RS20800 at 4515.256 kb on - strand, within RR42_RS20800 at 4515.327 kb on + strand at 4515.327 kb on + strand at 4515.328 kb on - strand at 4515.328 kb on - strand at 4515.328 kb on - strand at 4515.328 kb on - strand at 4515.443 kb on + strand at 4515.444 kb on - strand at 4515.444 kb on - strand at 4515.444 kb on - strand at 4515.444 kb on - strand at 4515.444 kb on - strand at 4516.649 kb on + strand, within RR42_RS20805 at 4517.123 kb on - strand, within RR42_RS20810 at 4517.162 kb on - strand, within RR42_RS20810 at 4517.617 kb on - strand, within RR42_RS20810 at 4517.814 kb on + strand at 4517.814 kb on + strand at 4517.814 kb on + strand at 4517.815 kb on - strand at 4517.818 kb on + strand at 4517.819 kb on - strand at 4517.819 kb on - strand at 4517.829 kb on - strand at 4517.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 4,514,586 + -0.3 4,514,652 + RR42_RS20800 0.11 +0.3 4,514,652 + RR42_RS20800 0.11 -1.1 4,514,685 + RR42_RS20800 0.15 +0.7 4,514,686 - RR42_RS20800 0.15 +0.7 4,514,740 + RR42_RS20800 0.21 +0.0 4,514,934 + RR42_RS20800 0.45 +1.2 4,514,934 + RR42_RS20800 0.45 -1.1 4,514,934 + RR42_RS20800 0.45 -1.6 4,514,934 + RR42_RS20800 0.45 +0.5 4,514,935 - RR42_RS20800 0.45 -0.2 4,514,935 - RR42_RS20800 0.45 -0.9 4,514,935 - RR42_RS20800 0.45 -0.4 4,514,935 - RR42_RS20800 0.45 -0.1 4,514,935 - RR42_RS20800 0.45 +1.0 4,514,935 - RR42_RS20800 0.45 +0.0 4,514,997 + RR42_RS20800 0.52 +0.6 4,515,088 - RR42_RS20800 0.63 +0.0 4,515,088 - RR42_RS20800 0.63 -0.3 4,515,222 + RR42_RS20800 0.79 -0.9 4,515,222 + RR42_RS20800 0.79 -0.3 4,515,234 + RR42_RS20800 0.81 -0.4 4,515,234 + RR42_RS20800 0.81 -0.1 4,515,234 + RR42_RS20800 0.81 -1.1 4,515,234 + RR42_RS20800 0.81 -0.0 4,515,235 - RR42_RS20800 0.81 -1.3 4,515,255 + RR42_RS20800 0.83 -0.1 4,515,255 + RR42_RS20800 0.83 +0.8 4,515,255 + RR42_RS20800 0.83 -0.1 4,515,256 - RR42_RS20800 0.84 -3.1 4,515,256 - RR42_RS20800 0.84 -0.4 4,515,256 - RR42_RS20800 0.84 +0.4 4,515,256 - RR42_RS20800 0.84 +0.9 4,515,327 + +0.6 4,515,327 + +0.9 4,515,328 - -0.1 4,515,328 - -0.4 4,515,328 - -0.5 4,515,328 - +1.3 4,515,443 + +0.2 4,515,444 - +1.2 4,515,444 - -0.2 4,515,444 - -1.0 4,515,444 - -0.3 4,515,444 - -0.3 4,516,649 + RR42_RS20805 0.83 -1.4 4,517,123 - RR42_RS20810 0.13 +1.2 4,517,162 - RR42_RS20810 0.18 -0.7 4,517,617 - RR42_RS20810 0.77 +0.8 4,517,814 + +0.1 4,517,814 + -0.4 4,517,814 + -0.6 4,517,815 - -0.7 4,517,818 + +0.5 4,517,819 - +0.1 4,517,819 - +0.1 4,517,829 - +3.0 4,517,829 - -0.7
Or see this region's nucleotide sequence