Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18090

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18085 and RR42_RS18090 are separated by 50 nucleotidesRR42_RS18090 and RR42_RS18095 are separated by 80 nucleotides RR42_RS18085: RR42_RS18085 - UDP-N-acetylmuramoylalanine--D-glutamate ligase, at 3,912,938 to 3,914,464 _RS18085 RR42_RS18090: RR42_RS18090 - phospho-N-acetylmuramoyl-pentapeptide transferase, at 3,914,515 to 3,915,684 _RS18090 RR42_RS18095: RR42_RS18095 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 3,915,765 to 3,917,180 _RS18095 Position (kb) 3914 3915 3916Strain fitness (log2 ratio) -2 -1 0 1at 3914.500 kb on - strandat 3914.500 kb on - strandat 3914.500 kb on - strandat 3914.504 kb on - strandat 3914.504 kb on - strandat 3915.696 kb on - strandat 3915.696 kb on - strandat 3915.696 kb on - strandat 3915.730 kb on - strandat 3915.746 kb on - strandat 3915.750 kb on - strandat 3915.750 kb on - strandat 3915.750 kb on - strandat 3915.767 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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3,914,500 - -0.3
3,914,500 - -0.8
3,914,500 - -1.1
3,914,504 - -1.8
3,914,504 - -0.0
3,915,696 - +1.0
3,915,696 - -2.7
3,915,696 - -0.0
3,915,730 - +0.1
3,915,746 - -2.0
3,915,750 - -0.8
3,915,750 - -0.5
3,915,750 - -0.0
3,915,767 - +0.8

Or see this region's nucleotide sequence