Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14440

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14430 and RR42_RS14435 are separated by 40 nucleotidesRR42_RS14435 and RR42_RS14440 are separated by 81 nucleotidesRR42_RS14440 and RR42_RS14445 are separated by 31 nucleotides RR42_RS14430: RR42_RS14430 - type II citrate synthase, at 3,103,877 to 3,105,178 _RS14430 RR42_RS14435: RR42_RS14435 - hypothetical protein, at 3,105,219 to 3,105,506 _RS14435 RR42_RS14440: RR42_RS14440 - succinate dehydrogenase, at 3,105,588 to 3,106,289 _RS14440 RR42_RS14445: RR42_RS14445 - fumarate reductase, at 3,106,321 to 3,108,099 _RS14445 Position (kb) 3105 3106 3107Strain fitness (log2 ratio) -1 0 1at 3105.205 kb on - strandat 3105.511 kb on - strandat 3105.511 kb on - strandat 3105.515 kb on - strandat 3105.515 kb on - strandat 3105.537 kb on - strandat 3105.549 kb on - strandat 3105.571 kb on - strandat 3105.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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3,105,205 - +0.1
3,105,511 - +0.8
3,105,511 - +0.8
3,105,515 - -1.5
3,105,515 - -0.4
3,105,537 - -0.0
3,105,549 - -0.4
3,105,571 - -0.3
3,105,571 - +0.2

Or see this region's nucleotide sequence