Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14345

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14340 and RR42_RS14345 are separated by 881 nucleotidesRR42_RS14345 and RR42_RS14350 are separated by 182 nucleotidesRR42_RS14350 and RR42_RS14355 are separated by 2 nucleotides RR42_RS14340: RR42_RS14340 - folylpolyglutamate synthase, at 3,081,969 to 3,083,279 _RS14340 RR42_RS14345: RR42_RS14345 - acetyl-CoA carboxylase subunit beta, at 3,084,161 to 3,085,033 _RS14345 RR42_RS14350: RR42_RS14350 - tryptophan synthase alpha chain, at 3,085,216 to 3,086,013 _RS14350 RR42_RS14355: RR42_RS14355 - DNA methylase N-4, at 3,086,016 to 3,086,924 _RS14355 Position (kb) 3084 3085 3086Strain fitness (log2 ratio) -2 -1 0 1at 3083.313 kb on - strandat 3083.333 kb on - strandat 3083.378 kb on - strandat 3083.405 kb on - strandat 3083.405 kb on - strandat 3083.432 kb on - strandat 3083.454 kb on - strandat 3083.454 kb on - strandat 3083.486 kb on - strandat 3084.163 kb on - strandat 3085.082 kb on - strandat 3085.267 kb on + strandat 3085.487 kb on + strand, within RR42_RS14350

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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3,083,313 - -0.3
3,083,333 - -1.6
3,083,378 - -1.1
3,083,405 - -1.3
3,083,405 - -1.0
3,083,432 - -1.0
3,083,454 - -0.3
3,083,454 - -0.7
3,083,486 - +1.3
3,084,163 - -0.6
3,085,082 - -0.6
3,085,267 + -2.7
3,085,487 + RR42_RS14350 0.34 -2.1

Or see this region's nucleotide sequence