Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14115

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14110 and RR42_RS14115 are separated by 59 nucleotidesRR42_RS14115 and RR42_RS14120 are separated by 323 nucleotidesRR42_RS14120 and RR42_RS14125 are separated by 119 nucleotides RR42_RS14110: RR42_RS14110 - 3-oxoacyl-ACP synthase, at 3,035,226 to 3,036,206 _RS14110 RR42_RS14115: RR42_RS14115 - phosphate acyltransferase, at 3,036,266 to 3,037,342 _RS14115 RR42_RS14120: RR42_RS14120 - 50S ribosomal protein L32, at 3,037,666 to 3,037,845 _RS14120 RR42_RS14125: RR42_RS14125 - metal-binding protein, at 3,037,965 to 3,038,561 _RS14125 Position (kb) 3036 3037 3038Strain fitness (log2 ratio) -2 -1 0 1at 3036.209 kb on - strandat 3036.209 kb on - strandat 3036.209 kb on - strandat 3036.209 kb on - strandat 3036.209 kb on - strandat 3036.209 kb on - strandat 3036.209 kb on - strandat 3036.255 kb on - strandat 3036.335 kb on - strandat 3037.499 kb on - strandat 3037.499 kb on - strandat 3037.622 kb on - strandat 3037.622 kb on - strandat 3037.622 kb on - strandat 3038.279 kb on - strand, within RR42_RS14125

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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3,036,209 - +0.2
3,036,209 - +1.0
3,036,209 - -0.2
3,036,209 - -0.4
3,036,209 - +0.3
3,036,209 - +0.2
3,036,209 - -0.9
3,036,255 - -2.6
3,036,335 - -0.3
3,037,499 - +0.2
3,037,499 - -0.3
3,037,622 - +0.1
3,037,622 - -1.0
3,037,622 - -1.3
3,038,279 - RR42_RS14125 0.53 +1.2

Or see this region's nucleotide sequence