Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13145 and RR42_RS13150 overlap by 8 nucleotides RR42_RS13150 and RR42_RS13155 overlap by 4 nucleotides RR42_RS13155 and RR42_RS13160 are separated by 53 nucleotides RR42_RS13160 and RR42_RS13165 are separated by 339 nucleotides
RR42_RS13145: RR42_RS13145 - DNA-binding protein, at 2,832,772 to 2,833,785
_RS13145
RR42_RS13150: RR42_RS13150 - pilus assembly protein PilW, at 2,833,778 to 2,834,557
_RS13150
RR42_RS13155: RR42_RS13155 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,834,554 to 2,835,708
_RS13155
RR42_RS13160: RR42_RS13160 - nucleoside diphosphate kinase, at 2,835,762 to 2,836,187
_RS13160
RR42_RS13165: RR42_RS13165 - membrane protein, at 2,836,527 to 2,837,228
_RS13165
Position (kb)
2834
2835
2836 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2833.791 kb on - strand at 2833.957 kb on - strand, within RR42_RS13150 at 2833.990 kb on - strand, within RR42_RS13150 at 2833.990 kb on - strand, within RR42_RS13150 at 2833.990 kb on - strand, within RR42_RS13150 at 2834.167 kb on - strand, within RR42_RS13150 at 2834.215 kb on - strand, within RR42_RS13150 at 2834.215 kb on - strand, within RR42_RS13150 at 2834.215 kb on - strand, within RR42_RS13150 at 2834.305 kb on - strand, within RR42_RS13150 at 2834.305 kb on - strand, within RR42_RS13150 at 2834.326 kb on - strand, within RR42_RS13150 at 2834.389 kb on - strand, within RR42_RS13150 at 2834.407 kb on - strand, within RR42_RS13150 at 2835.718 kb on - strand at 2835.718 kb on - strand at 2835.718 kb on - strand at 2835.718 kb on - strand at 2835.728 kb on - strand at 2835.728 kb on - strand at 2835.738 kb on - strand at 2835.738 kb on - strand at 2835.738 kb on - strand at 2835.738 kb on - strand at 2835.751 kb on - strand at 2835.773 kb on - strand at 2836.213 kb on - strand at 2836.224 kb on - strand at 2836.354 kb on - strand at 2836.354 kb on - strand at 2836.354 kb on - strand at 2836.354 kb on - strand at 2836.548 kb on + strand at 2836.548 kb on + strand at 2836.548 kb on + strand at 2836.549 kb on - strand at 2836.549 kb on - strand at 2836.549 kb on - strand at 2836.549 kb on - strand at 2836.614 kb on + strand, within RR42_RS13165 at 2836.614 kb on + strand, within RR42_RS13165 at 2836.615 kb on - strand, within RR42_RS13165 at 2836.615 kb on - strand, within RR42_RS13165 at 2836.615 kb on - strand, within RR42_RS13165
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 2,833,791 - -0.5 2,833,957 - RR42_RS13150 0.23 -1.0 2,833,990 - RR42_RS13150 0.27 -1.1 2,833,990 - RR42_RS13150 0.27 +0.7 2,833,990 - RR42_RS13150 0.27 +0.4 2,834,167 - RR42_RS13150 0.50 -0.4 2,834,215 - RR42_RS13150 0.56 -0.6 2,834,215 - RR42_RS13150 0.56 +0.5 2,834,215 - RR42_RS13150 0.56 -0.2 2,834,305 - RR42_RS13150 0.68 +0.1 2,834,305 - RR42_RS13150 0.68 +2.2 2,834,326 - RR42_RS13150 0.70 +0.2 2,834,389 - RR42_RS13150 0.78 -1.0 2,834,407 - RR42_RS13150 0.81 -0.3 2,835,718 - +1.0 2,835,718 - -0.6 2,835,718 - -0.6 2,835,718 - -0.9 2,835,728 - -0.1 2,835,728 - -0.5 2,835,738 - +0.5 2,835,738 - -0.6 2,835,738 - +0.2 2,835,738 - +0.3 2,835,751 - -1.0 2,835,773 - -1.8 2,836,213 - -1.2 2,836,224 - -0.5 2,836,354 - +0.1 2,836,354 - -0.5 2,836,354 - +0.7 2,836,354 - +0.1 2,836,548 + +0.2 2,836,548 + -1.3 2,836,548 + -0.3 2,836,549 - -1.2 2,836,549 - -0.2 2,836,549 - +0.8 2,836,549 - -0.3 2,836,614 + RR42_RS13165 0.12 -0.2 2,836,614 + RR42_RS13165 0.12 -1.4 2,836,615 - RR42_RS13165 0.13 +2.8 2,836,615 - RR42_RS13165 0.13 -1.2 2,836,615 - RR42_RS13165 0.13 -1.3
Or see this region's nucleotide sequence