Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13155

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13145 and RR42_RS13150 overlap by 8 nucleotidesRR42_RS13150 and RR42_RS13155 overlap by 4 nucleotidesRR42_RS13155 and RR42_RS13160 are separated by 53 nucleotidesRR42_RS13160 and RR42_RS13165 are separated by 339 nucleotides RR42_RS13145: RR42_RS13145 - DNA-binding protein, at 2,832,772 to 2,833,785 _RS13145 RR42_RS13150: RR42_RS13150 - pilus assembly protein PilW, at 2,833,778 to 2,834,557 _RS13150 RR42_RS13155: RR42_RS13155 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,834,554 to 2,835,708 _RS13155 RR42_RS13160: RR42_RS13160 - nucleoside diphosphate kinase, at 2,835,762 to 2,836,187 _RS13160 RR42_RS13165: RR42_RS13165 - membrane protein, at 2,836,527 to 2,837,228 _RS13165 Position (kb) 2834 2835 2836Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2833.791 kb on - strandat 2833.957 kb on - strand, within RR42_RS13150at 2833.990 kb on - strand, within RR42_RS13150at 2833.990 kb on - strand, within RR42_RS13150at 2833.990 kb on - strand, within RR42_RS13150at 2834.167 kb on - strand, within RR42_RS13150at 2834.215 kb on - strand, within RR42_RS13150at 2834.215 kb on - strand, within RR42_RS13150at 2834.215 kb on - strand, within RR42_RS13150at 2834.305 kb on - strand, within RR42_RS13150at 2834.305 kb on - strand, within RR42_RS13150at 2834.326 kb on - strand, within RR42_RS13150at 2834.389 kb on - strand, within RR42_RS13150at 2834.407 kb on - strand, within RR42_RS13150at 2835.718 kb on - strandat 2835.718 kb on - strandat 2835.718 kb on - strandat 2835.718 kb on - strandat 2835.728 kb on - strandat 2835.728 kb on - strandat 2835.738 kb on - strandat 2835.738 kb on - strandat 2835.738 kb on - strandat 2835.738 kb on - strandat 2835.751 kb on - strandat 2835.773 kb on - strandat 2836.213 kb on - strandat 2836.224 kb on - strandat 2836.354 kb on - strandat 2836.354 kb on - strandat 2836.354 kb on - strandat 2836.354 kb on - strandat 2836.548 kb on + strandat 2836.548 kb on + strandat 2836.548 kb on + strandat 2836.549 kb on - strandat 2836.549 kb on - strandat 2836.549 kb on - strandat 2836.549 kb on - strandat 2836.614 kb on + strand, within RR42_RS13165at 2836.614 kb on + strand, within RR42_RS13165at 2836.615 kb on - strand, within RR42_RS13165at 2836.615 kb on - strand, within RR42_RS13165at 2836.615 kb on - strand, within RR42_RS13165

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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2,833,791 - -0.5
2,833,957 - RR42_RS13150 0.23 -1.0
2,833,990 - RR42_RS13150 0.27 -1.1
2,833,990 - RR42_RS13150 0.27 +0.7
2,833,990 - RR42_RS13150 0.27 +0.4
2,834,167 - RR42_RS13150 0.50 -0.4
2,834,215 - RR42_RS13150 0.56 -0.6
2,834,215 - RR42_RS13150 0.56 +0.5
2,834,215 - RR42_RS13150 0.56 -0.2
2,834,305 - RR42_RS13150 0.68 +0.1
2,834,305 - RR42_RS13150 0.68 +2.2
2,834,326 - RR42_RS13150 0.70 +0.2
2,834,389 - RR42_RS13150 0.78 -1.0
2,834,407 - RR42_RS13150 0.81 -0.3
2,835,718 - +1.0
2,835,718 - -0.6
2,835,718 - -0.6
2,835,718 - -0.9
2,835,728 - -0.1
2,835,728 - -0.5
2,835,738 - +0.5
2,835,738 - -0.6
2,835,738 - +0.2
2,835,738 - +0.3
2,835,751 - -1.0
2,835,773 - -1.8
2,836,213 - -1.2
2,836,224 - -0.5
2,836,354 - +0.1
2,836,354 - -0.5
2,836,354 - +0.7
2,836,354 - +0.1
2,836,548 + +0.2
2,836,548 + -1.3
2,836,548 + -0.3
2,836,549 - -1.2
2,836,549 - -0.2
2,836,549 - +0.8
2,836,549 - -0.3
2,836,614 + RR42_RS13165 0.12 -0.2
2,836,614 + RR42_RS13165 0.12 -1.4
2,836,615 - RR42_RS13165 0.13 +2.8
2,836,615 - RR42_RS13165 0.13 -1.2
2,836,615 - RR42_RS13165 0.13 -1.3

Or see this region's nucleotide sequence