Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11840

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11835 and RR42_RS11840 are separated by 123 nucleotidesRR42_RS11840 and RR42_RS11845 are separated by 138 nucleotides RR42_RS11835: RR42_RS11835 - membrane protein, at 2,529,202 to 2,531,511 _RS11835 RR42_RS11840: RR42_RS11840 - zinc metalloprotease, at 2,531,635 to 2,533,026 _RS11840 RR42_RS11845: RR42_RS11845 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,533,165 to 2,534,343 _RS11845 Position (kb) 2531 2532 2533 2534Strain fitness (log2 ratio) -1 0 1 2at 2531.778 kb on - strand, within RR42_RS11840at 2531.812 kb on - strand, within RR42_RS11840at 2532.668 kb on + strand, within RR42_RS11840at 2532.827 kb on + strand, within RR42_RS11840at 2532.959 kb on + strandat 2532.959 kb on + strandat 2532.959 kb on + strandat 2532.981 kb on - strandat 2533.015 kb on + strandat 2533.074 kb on + strandat 2533.074 kb on + strandat 2533.131 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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2,531,778 - RR42_RS11840 0.10 -0.9
2,531,812 - RR42_RS11840 0.13 -0.4
2,532,668 + RR42_RS11840 0.74 -0.1
2,532,827 + RR42_RS11840 0.86 -0.5
2,532,959 + -0.3
2,532,959 + -0.2
2,532,959 + +0.3
2,532,981 - -0.1
2,533,015 + +2.3
2,533,074 + +0.4
2,533,074 + -0.3
2,533,131 - +0.8

Or see this region's nucleotide sequence