Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09140

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09135 and RR42_RS09140 are separated by 275 nucleotidesRR42_RS09140 and RR42_RS09145 are separated by 211 nucleotidesRR42_RS09145 and RR42_RS09150 are separated by 246 nucleotides RR42_RS09135: RR42_RS09135 - hypothetical protein, at 1,927,880 to 1,929,826 _RS09135 RR42_RS09140: RR42_RS09140 - phosphoribosylformylglycinamidine synthase, at 1,930,102 to 1,934,148 _RS09140 RR42_RS09145: RR42_RS09145 - hypothetical protein, at 1,934,360 to 1,934,653 _RS09145 RR42_RS09150: RR42_RS09150 - molybdopterin-binding protein, at 1,934,900 to 1,935,652 _RS09150 Position (kb) 1930 1931 1932 1933 1934 1935Strain fitness (log2 ratio) -2 -1 0 1 2at 1929.158 kb on + strand, within RR42_RS09135at 1929.159 kb on - strand, within RR42_RS09135at 1929.204 kb on - strand, within RR42_RS09135at 1929.255 kb on - strand, within RR42_RS09135at 1929.255 kb on - strand, within RR42_RS09135at 1929.350 kb on + strand, within RR42_RS09135at 1929.351 kb on - strand, within RR42_RS09135at 1929.868 kb on + strandat 1929.868 kb on + strandat 1929.868 kb on + strandat 1929.869 kb on - strandat 1929.877 kb on - strandat 1930.011 kb on + strandat 1930.011 kb on + strandat 1930.011 kb on + strandat 1930.011 kb on + strandat 1930.011 kb on + strandat 1930.012 kb on - strandat 1930.012 kb on - strandat 1930.012 kb on - strandat 1930.012 kb on - strandat 1930.012 kb on - strandat 1930.012 kb on - strandat 1930.013 kb on + strandat 1930.073 kb on + strandat 1930.073 kb on + strandat 1934.319 kb on + strandat 1934.323 kb on + strandat 1934.323 kb on + strandat 1934.323 kb on + strandat 1934.392 kb on - strand, within RR42_RS09145at 1934.400 kb on + strand, within RR42_RS09145at 1934.401 kb on - strand, within RR42_RS09145at 1934.401 kb on - strand, within RR42_RS09145at 1934.584 kb on - strand, within RR42_RS09145at 1934.584 kb on - strand, within RR42_RS09145at 1934.758 kb on + strandat 1934.758 kb on + strandat 1934.758 kb on + strandat 1934.758 kb on + strandat 1934.758 kb on + strandat 1934.759 kb on - strandat 1934.759 kb on - strandat 1934.761 kb on + strandat 1934.902 kb on - strandat 1934.920 kb on + strandat 1934.921 kb on - strandat 1934.921 kb on - strandat 1934.921 kb on - strandat 1934.921 kb on - strandat 1934.922 kb on + strandat 1934.922 kb on + strandat 1934.923 kb on - strandat 1934.923 kb on - strandat 1934.923 kb on - strandat 1934.981 kb on - strand, within RR42_RS09150at 1934.981 kb on - strand, within RR42_RS09150at 1935.124 kb on - strand, within RR42_RS09150

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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1,929,158 + RR42_RS09135 0.66 -0.7
1,929,159 - RR42_RS09135 0.66 +0.1
1,929,204 - RR42_RS09135 0.68 -1.2
1,929,255 - RR42_RS09135 0.71 -0.5
1,929,255 - RR42_RS09135 0.71 -0.5
1,929,350 + RR42_RS09135 0.76 +0.4
1,929,351 - RR42_RS09135 0.76 -0.9
1,929,868 + -0.0
1,929,868 + +0.4
1,929,868 + +0.6
1,929,869 - -0.0
1,929,877 - -0.9
1,930,011 + +0.5
1,930,011 + -0.7
1,930,011 + -0.3
1,930,011 + -0.4
1,930,011 + -0.5
1,930,012 - +1.1
1,930,012 - -1.0
1,930,012 - -0.5
1,930,012 - +1.1
1,930,012 - -2.0
1,930,012 - +0.4
1,930,013 + +0.1
1,930,073 + -0.3
1,930,073 + +0.1
1,934,319 + -0.5
1,934,323 + -0.1
1,934,323 + -1.5
1,934,323 + -0.6
1,934,392 - RR42_RS09145 0.11 -0.8
1,934,400 + RR42_RS09145 0.14 -0.1
1,934,401 - RR42_RS09145 0.14 +0.6
1,934,401 - RR42_RS09145 0.14 -0.9
1,934,584 - RR42_RS09145 0.76 -0.2
1,934,584 - RR42_RS09145 0.76 +0.1
1,934,758 + +1.1
1,934,758 + -0.3
1,934,758 + -0.6
1,934,758 + +2.1
1,934,758 + -0.8
1,934,759 - -0.4
1,934,759 - +0.4
1,934,761 + -0.0
1,934,902 - +0.2
1,934,920 + +1.3
1,934,921 - -0.0
1,934,921 - +0.3
1,934,921 - +0.7
1,934,921 - -0.0
1,934,922 + -1.9
1,934,922 + +1.2
1,934,923 - -0.7
1,934,923 - +0.1
1,934,923 - +0.1
1,934,981 - RR42_RS09150 0.11 +0.1
1,934,981 - RR42_RS09150 0.11 +0.4
1,935,124 - RR42_RS09150 0.30 +0.0

Or see this region's nucleotide sequence