Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08625

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08610 and RR42_RS08615 overlap by 4 nucleotidesRR42_RS08615 and RR42_RS08620 are separated by 2 nucleotidesRR42_RS08620 and RR42_RS08625 are separated by 14 nucleotidesRR42_RS08625 and RR42_RS08630 overlap by 1 nucleotidesRR42_RS08630 and RR42_RS08635 are separated by 95 nucleotides RR42_RS08610: RR42_RS08610 - peptidoglycan-binding protein, at 1,807,007 to 1,807,813 _RS08610 RR42_RS08615: RR42_RS08615 - membrane protein, at 1,807,810 to 1,808,115 _RS08615 RR42_RS08620: RR42_RS08620 - membrane protein, at 1,808,118 to 1,808,507 _RS08620 RR42_RS08625: RR42_RS08625 - tail protein X, at 1,808,522 to 1,808,725 _RS08625 RR42_RS08630: RR42_RS08630 - head completion/stabilization protein, at 1,808,725 to 1,809,192 _RS08630 RR42_RS08635: RR42_RS08635 - terminase, at 1,809,288 to 1,810,010 _RS08635 Position (kb) 1808 1809Strain fitness (log2 ratio) -2 -1 0 1 2at 1807.556 kb on + strand, within RR42_RS08610at 1807.899 kb on - strand, within RR42_RS08615at 1807.899 kb on - strand, within RR42_RS08615at 1808.250 kb on + strand, within RR42_RS08620at 1808.250 kb on + strand, within RR42_RS08620at 1808.250 kb on + strand, within RR42_RS08620at 1808.288 kb on - strand, within RR42_RS08620at 1808.671 kb on - strand, within RR42_RS08625at 1808.818 kb on + strand, within RR42_RS08630at 1808.897 kb on + strand, within RR42_RS08630at 1808.987 kb on + strand, within RR42_RS08630at 1809.207 kb on - strandat 1809.541 kb on - strand, within RR42_RS08635at 1809.688 kb on + strand, within RR42_RS08635at 1809.689 kb on - strand, within RR42_RS08635at 1809.689 kb on - strand, within RR42_RS08635

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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1,807,556 + RR42_RS08610 0.68 +1.9
1,807,899 - RR42_RS08615 0.29 -1.5
1,807,899 - RR42_RS08615 0.29 +0.2
1,808,250 + RR42_RS08620 0.34 +1.4
1,808,250 + RR42_RS08620 0.34 +0.7
1,808,250 + RR42_RS08620 0.34 -0.6
1,808,288 - RR42_RS08620 0.44 -0.3
1,808,671 - RR42_RS08625 0.73 -0.3
1,808,818 + RR42_RS08630 0.20 +0.2
1,808,897 + RR42_RS08630 0.37 +1.2
1,808,987 + RR42_RS08630 0.56 -0.4
1,809,207 - -1.2
1,809,541 - RR42_RS08635 0.35 +0.2
1,809,688 + RR42_RS08635 0.55 +0.1
1,809,689 - RR42_RS08635 0.55 -1.9
1,809,689 - RR42_RS08635 0.55 -0.4

Or see this region's nucleotide sequence