Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08420

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08410 and RR42_RS08415 overlap by 14 nucleotidesRR42_RS08415 and RR42_RS08420 are separated by 53 nucleotidesRR42_RS08420 and RR42_RS08425 are separated by 982 nucleotides RR42_RS08410: RR42_RS08410 - hypothetical protein, at 1,776,368 to 1,776,859 _RS08410 RR42_RS08415: RR42_RS08415 - hypothetical protein, at 1,776,846 to 1,777,271 _RS08415 RR42_RS08420: RR42_RS08420 - hypothetical protein, at 1,777,325 to 1,777,585 _RS08420 RR42_RS08425: RR42_RS08425 - hypothetical protein, at 1,778,568 to 1,779,206 _RS08425 Position (kb) 1777 1778Strain fitness (log2 ratio) -2 -1 0 1 2at 1776.686 kb on + strand, within RR42_RS08410at 1776.687 kb on - strand, within RR42_RS08410at 1776.687 kb on - strand, within RR42_RS08410at 1776.800 kb on + strand, within RR42_RS08410at 1776.800 kb on + strand, within RR42_RS08410at 1776.801 kb on - strand, within RR42_RS08410at 1776.963 kb on + strand, within RR42_RS08415at 1777.116 kb on + strand, within RR42_RS08415at 1777.164 kb on + strand, within RR42_RS08415at 1777.164 kb on + strand, within RR42_RS08415at 1777.164 kb on + strand, within RR42_RS08415at 1777.165 kb on - strand, within RR42_RS08415at 1777.267 kb on + strandat 1777.267 kb on + strandat 1777.267 kb on + strandat 1777.267 kb on + strandat 1777.268 kb on - strandat 1777.324 kb on + strandat 1777.355 kb on - strand, within RR42_RS08420at 1777.622 kb on - strandat 1777.622 kb on - strandat 1777.634 kb on - strandat 1777.641 kb on + strandat 1777.642 kb on - strandat 1777.711 kb on + strandat 1777.714 kb on + strandat 1777.889 kb on + strandat 1777.890 kb on - strandat 1777.890 kb on - strandat 1777.924 kb on + strandat 1777.925 kb on - strandat 1778.074 kb on + strandat 1778.155 kb on + strandat 1778.156 kb on - strandat 1778.156 kb on - strandat 1778.156 kb on - strandat 1778.156 kb on - strandat 1778.207 kb on + strandat 1778.208 kb on - strandat 1778.239 kb on - strandat 1778.239 kb on - strandat 1778.280 kb on + strandat 1778.280 kb on + strandat 1778.280 kb on + strandat 1778.318 kb on + strandat 1778.404 kb on + strandat 1778.405 kb on - strandat 1778.405 kb on - strandat 1778.405 kb on - strandat 1778.540 kb on + strandat 1778.540 kb on + strandat 1778.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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1,776,686 + RR42_RS08410 0.65 -0.2
1,776,687 - RR42_RS08410 0.65 +0.0
1,776,687 - RR42_RS08410 0.65 +0.7
1,776,800 + RR42_RS08410 0.88 -1.1
1,776,800 + RR42_RS08410 0.88 -1.4
1,776,801 - RR42_RS08410 0.88 +0.9
1,776,963 + RR42_RS08415 0.27 +0.4
1,777,116 + RR42_RS08415 0.63 -0.0
1,777,164 + RR42_RS08415 0.75 +0.2
1,777,164 + RR42_RS08415 0.75 -1.4
1,777,164 + RR42_RS08415 0.75 +1.3
1,777,165 - RR42_RS08415 0.75 -1.3
1,777,267 + +0.0
1,777,267 + -0.0
1,777,267 + +0.4
1,777,267 + +0.1
1,777,268 - +0.6
1,777,324 + +0.1
1,777,355 - RR42_RS08420 0.11 -0.5
1,777,622 - -0.1
1,777,622 - -0.1
1,777,634 - -0.2
1,777,641 + +0.2
1,777,642 - -0.6
1,777,711 + +0.8
1,777,714 + -0.3
1,777,889 + +0.5
1,777,890 - -1.8
1,777,890 - -0.9
1,777,924 + +1.8
1,777,925 - +0.4
1,778,074 + +0.4
1,778,155 + -0.9
1,778,156 - -0.8
1,778,156 - -0.3
1,778,156 - +1.5
1,778,156 - -0.2
1,778,207 + -1.6
1,778,208 - -0.1
1,778,239 - -0.2
1,778,239 - +0.2
1,778,280 + +0.2
1,778,280 + -1.8
1,778,280 + -0.8
1,778,318 + +1.2
1,778,404 + +0.2
1,778,405 - -0.3
1,778,405 - -0.6
1,778,405 - -0.6
1,778,540 + +1.2
1,778,540 + +0.6
1,778,551 - -0.7

Or see this region's nucleotide sequence