Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08410 and RR42_RS08415 overlap by 14 nucleotides RR42_RS08415 and RR42_RS08420 are separated by 53 nucleotides RR42_RS08420 and RR42_RS08425 are separated by 982 nucleotides
RR42_RS08410: RR42_RS08410 - hypothetical protein, at 1,776,368 to 1,776,859
_RS08410
RR42_RS08415: RR42_RS08415 - hypothetical protein, at 1,776,846 to 1,777,271
_RS08415
RR42_RS08420: RR42_RS08420 - hypothetical protein, at 1,777,325 to 1,777,585
_RS08420
RR42_RS08425: RR42_RS08425 - hypothetical protein, at 1,778,568 to 1,779,206
_RS08425
Position (kb)
1777
1778 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1776.686 kb on + strand, within RR42_RS08410 at 1776.687 kb on - strand, within RR42_RS08410 at 1776.687 kb on - strand, within RR42_RS08410 at 1776.800 kb on + strand, within RR42_RS08410 at 1776.800 kb on + strand, within RR42_RS08410 at 1776.801 kb on - strand, within RR42_RS08410 at 1776.963 kb on + strand, within RR42_RS08415 at 1777.116 kb on + strand, within RR42_RS08415 at 1777.164 kb on + strand, within RR42_RS08415 at 1777.164 kb on + strand, within RR42_RS08415 at 1777.164 kb on + strand, within RR42_RS08415 at 1777.165 kb on - strand, within RR42_RS08415 at 1777.267 kb on + strand at 1777.267 kb on + strand at 1777.267 kb on + strand at 1777.267 kb on + strand at 1777.268 kb on - strand at 1777.324 kb on + strand at 1777.355 kb on - strand, within RR42_RS08420 at 1777.622 kb on - strand at 1777.622 kb on - strand at 1777.634 kb on - strand at 1777.641 kb on + strand at 1777.642 kb on - strand at 1777.711 kb on + strand at 1777.714 kb on + strand at 1777.889 kb on + strand at 1777.890 kb on - strand at 1777.890 kb on - strand at 1777.924 kb on + strand at 1777.925 kb on - strand at 1778.074 kb on + strand at 1778.155 kb on + strand at 1778.156 kb on - strand at 1778.156 kb on - strand at 1778.156 kb on - strand at 1778.156 kb on - strand at 1778.207 kb on + strand at 1778.208 kb on - strand at 1778.239 kb on - strand at 1778.239 kb on - strand at 1778.280 kb on + strand at 1778.280 kb on + strand at 1778.280 kb on + strand at 1778.318 kb on + strand at 1778.404 kb on + strand at 1778.405 kb on - strand at 1778.405 kb on - strand at 1778.405 kb on - strand at 1778.540 kb on + strand at 1778.540 kb on + strand at 1778.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 1,776,686 + RR42_RS08410 0.65 -0.2 1,776,687 - RR42_RS08410 0.65 +0.0 1,776,687 - RR42_RS08410 0.65 +0.7 1,776,800 + RR42_RS08410 0.88 -1.1 1,776,800 + RR42_RS08410 0.88 -1.4 1,776,801 - RR42_RS08410 0.88 +0.9 1,776,963 + RR42_RS08415 0.27 +0.4 1,777,116 + RR42_RS08415 0.63 -0.0 1,777,164 + RR42_RS08415 0.75 +0.2 1,777,164 + RR42_RS08415 0.75 -1.4 1,777,164 + RR42_RS08415 0.75 +1.3 1,777,165 - RR42_RS08415 0.75 -1.3 1,777,267 + +0.0 1,777,267 + -0.0 1,777,267 + +0.4 1,777,267 + +0.1 1,777,268 - +0.6 1,777,324 + +0.1 1,777,355 - RR42_RS08420 0.11 -0.5 1,777,622 - -0.1 1,777,622 - -0.1 1,777,634 - -0.2 1,777,641 + +0.2 1,777,642 - -0.6 1,777,711 + +0.8 1,777,714 + -0.3 1,777,889 + +0.5 1,777,890 - -1.8 1,777,890 - -0.9 1,777,924 + +1.8 1,777,925 - +0.4 1,778,074 + +0.4 1,778,155 + -0.9 1,778,156 - -0.8 1,778,156 - -0.3 1,778,156 - +1.5 1,778,156 - -0.2 1,778,207 + -1.6 1,778,208 - -0.1 1,778,239 - -0.2 1,778,239 - +0.2 1,778,280 + +0.2 1,778,280 + -1.8 1,778,280 + -0.8 1,778,318 + +1.2 1,778,404 + +0.2 1,778,405 - -0.3 1,778,405 - -0.6 1,778,405 - -0.6 1,778,540 + +1.2 1,778,540 + +0.6 1,778,551 - -0.7
Or see this region's nucleotide sequence