Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08055

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08045 and RR42_RS08050 are separated by 307 nucleotidesRR42_RS08050 and RR42_RS08055 are separated by 148 nucleotidesRR42_RS08055 and RR42_RS08060 are separated by 57 nucleotidesRR42_RS08060 and RR42_RS08065 overlap by 1 nucleotidesRR42_RS08065 and RR42_RS08070 overlap by 4 nucleotidesRR42_RS08070 and RR42_RS08075 overlap by 1 nucleotides RR42_RS08045: RR42_RS08045 - hypothetical protein, at 1,724,298 to 1,724,849 _RS08045 RR42_RS08050: RR42_RS08050 - hypothetical protein, at 1,725,157 to 1,725,387 _RS08050 RR42_RS08055: RR42_RS08055 - hypothetical protein, at 1,725,536 to 1,726,153 _RS08055 RR42_RS08060: RR42_RS08060 - hypothetical protein, at 1,726,211 to 1,726,525 _RS08060 RR42_RS08065: RR42_RS08065 - transcriptional regulator, at 1,726,525 to 1,726,728 _RS08065 RR42_RS08070: RR42_RS08070 - hypothetical protein, at 1,726,725 to 1,726,907 _RS08070 RR42_RS08075: RR42_RS08075 - hypothetical protein, at 1,726,907 to 1,728,652 _RS08075 Position (kb) 1725 1726 1727Strain fitness (log2 ratio) -2 -1 0 1 2at 1724.572 kb on + strand, within RR42_RS08045at 1724.572 kb on + strand, within RR42_RS08045at 1724.572 kb on + strand, within RR42_RS08045at 1724.675 kb on - strand, within RR42_RS08045at 1724.722 kb on + strand, within RR42_RS08045at 1724.722 kb on + strand, within RR42_RS08045at 1725.072 kb on + strandat 1725.251 kb on + strand, within RR42_RS08050at 1725.403 kb on - strandat 1725.573 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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1,724,572 + RR42_RS08045 0.50 -0.2
1,724,572 + RR42_RS08045 0.50 +1.3
1,724,572 + RR42_RS08045 0.50 -0.9
1,724,675 - RR42_RS08045 0.68 +0.6
1,724,722 + RR42_RS08045 0.77 +1.9
1,724,722 + RR42_RS08045 0.77 +0.7
1,725,072 + -0.9
1,725,251 + RR42_RS08050 0.41 -0.1
1,725,403 - +0.4
1,725,573 + -1.8

Or see this region's nucleotide sequence