Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08045 and RR42_RS08050 are separated by 307 nucleotides RR42_RS08050 and RR42_RS08055 are separated by 148 nucleotides RR42_RS08055 and RR42_RS08060 are separated by 57 nucleotides RR42_RS08060 and RR42_RS08065 overlap by 1 nucleotides RR42_RS08065 and RR42_RS08070 overlap by 4 nucleotides RR42_RS08070 and RR42_RS08075 overlap by 1 nucleotides
RR42_RS08045: RR42_RS08045 - hypothetical protein, at 1,724,298 to 1,724,849
_RS08045
RR42_RS08050: RR42_RS08050 - hypothetical protein, at 1,725,157 to 1,725,387
_RS08050
RR42_RS08055: RR42_RS08055 - hypothetical protein, at 1,725,536 to 1,726,153
_RS08055
RR42_RS08060: RR42_RS08060 - hypothetical protein, at 1,726,211 to 1,726,525
_RS08060
RR42_RS08065: RR42_RS08065 - transcriptional regulator, at 1,726,525 to 1,726,728
_RS08065
RR42_RS08070: RR42_RS08070 - hypothetical protein, at 1,726,725 to 1,726,907
_RS08070
RR42_RS08075: RR42_RS08075 - hypothetical protein, at 1,726,907 to 1,728,652
_RS08075
Position (kb)
1725
1726
1727 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1724.572 kb on + strand, within RR42_RS08045 at 1724.572 kb on + strand, within RR42_RS08045 at 1724.572 kb on + strand, within RR42_RS08045 at 1724.675 kb on - strand, within RR42_RS08045 at 1724.722 kb on + strand, within RR42_RS08045 at 1724.722 kb on + strand, within RR42_RS08045 at 1725.072 kb on + strand at 1725.251 kb on + strand, within RR42_RS08050 at 1725.403 kb on - strand at 1725.573 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 1,724,572 + RR42_RS08045 0.50 -0.2 1,724,572 + RR42_RS08045 0.50 +1.3 1,724,572 + RR42_RS08045 0.50 -0.9 1,724,675 - RR42_RS08045 0.68 +0.6 1,724,722 + RR42_RS08045 0.77 +1.9 1,724,722 + RR42_RS08045 0.77 +0.7 1,725,072 + -0.9 1,725,251 + RR42_RS08050 0.41 -0.1 1,725,403 - +0.4 1,725,573 + -1.8
Or see this region's nucleotide sequence