Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07165

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07155 and RR42_RS07160 are separated by 59 nucleotidesRR42_RS07160 and RR42_RS07165 are separated by 1 nucleotidesRR42_RS07165 and RR42_RS07170 are separated by 21 nucleotidesRR42_RS07170 and RR42_RS07175 overlap by 4 nucleotidesRR42_RS07175 and RR42_RS07180 overlap by 1 nucleotides RR42_RS07155: RR42_RS07155 - hypothetical protein, at 1,533,644 to 1,534,405 _RS07155 RR42_RS07160: RR42_RS07160 - hypothetical protein, at 1,534,465 to 1,535,247 _RS07160 RR42_RS07165: RR42_RS07165 - hypothetical protein, at 1,535,249 to 1,535,467 _RS07165 RR42_RS07170: RR42_RS07170 - hypothetical protein, at 1,535,489 to 1,535,800 _RS07170 RR42_RS07175: RR42_RS07175 - hypothetical protein, at 1,535,797 to 1,536,120 _RS07175 RR42_RS07180: RR42_RS07180 - hypothetical protein, at 1,536,120 to 1,536,788 _RS07180 Position (kb) 1535 1536Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1534.281 kb on - strand, within RR42_RS07155at 1534.344 kb on - strandat 1534.429 kb on + strandat 1534.462 kb on - strandat 1534.690 kb on + strand, within RR42_RS07160at 1534.756 kb on + strand, within RR42_RS07160at 1534.756 kb on + strand, within RR42_RS07160at 1534.757 kb on - strand, within RR42_RS07160at 1534.809 kb on - strand, within RR42_RS07160at 1535.052 kb on - strand, within RR42_RS07160at 1535.552 kb on - strand, within RR42_RS07170at 1535.552 kb on - strand, within RR42_RS07170at 1535.552 kb on - strand, within RR42_RS07170at 1535.647 kb on + strand, within RR42_RS07170at 1536.098 kb on + strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.201 kb on + strand, within RR42_RS07180at 1536.234 kb on + strand, within RR42_RS07180

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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1,534,281 - RR42_RS07155 0.84 -1.9
1,534,344 - -0.5
1,534,429 + +1.2
1,534,462 - +2.8
1,534,690 + RR42_RS07160 0.29 -0.7
1,534,756 + RR42_RS07160 0.37 -1.4
1,534,756 + RR42_RS07160 0.37 +0.2
1,534,757 - RR42_RS07160 0.37 +0.0
1,534,809 - RR42_RS07160 0.44 -0.5
1,535,052 - RR42_RS07160 0.75 +0.5
1,535,552 - RR42_RS07170 0.20 -0.5
1,535,552 - RR42_RS07170 0.20 -0.3
1,535,552 - RR42_RS07170 0.20 +1.2
1,535,647 + RR42_RS07170 0.51 -0.2
1,536,098 + +0.3
1,536,152 - +0.5
1,536,152 - +0.8
1,536,152 - -1.9
1,536,201 + RR42_RS07180 0.12 +0.6
1,536,234 + RR42_RS07180 0.17 +3.8

Or see this region's nucleotide sequence