Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06160

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06150 and RR42_RS06160 are separated by 977 nucleotidesRR42_RS06160 and RR42_RS06165 are separated by 29 nucleotidesRR42_RS06165 and RR42_RS06170 are separated by 90 nucleotides RR42_RS06150: RR42_RS06150 - peptidase, at 1,351,748 to 1,352,551 _RS06150 RR42_RS06160: RR42_RS06160 - CTP synthase, at 1,353,529 to 1,355,181 _RS06160 RR42_RS06165: RR42_RS06165 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,355,211 to 1,356,083 _RS06165 RR42_RS06170: RR42_RS06170 - hypothetical protein, at 1,356,174 to 1,356,464 _RS06170 Position (kb) 1353 1354 1355 1356Strain fitness (log2 ratio) -1 0 1 2at 1352.624 kb on + strandat 1352.624 kb on + strandat 1352.625 kb on - strandat 1353.056 kb on + strandat 1353.056 kb on + strandat 1353.056 kb on + strandat 1353.057 kb on - strandat 1353.137 kb on + strandat 1353.267 kb on + strandat 1353.377 kb on - strandat 1356.138 kb on + strandat 1356.152 kb on + strandat 1356.152 kb on + strandat 1356.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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1,352,624 + +0.3
1,352,624 + -0.3
1,352,625 - +1.8
1,353,056 + +0.2
1,353,056 + -0.7
1,353,056 + +0.8
1,353,057 - +0.3
1,353,137 + -0.2
1,353,267 + -0.5
1,353,377 - -0.1
1,356,138 + -1.0
1,356,152 + -0.0
1,356,152 + +0.5
1,356,152 + +0.1

Or see this region's nucleotide sequence