Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04720

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04710 and RR42_RS04715 are separated by 23 nucleotidesRR42_RS04715 and RR42_RS04720 are separated by 15 nucleotidesRR42_RS04720 and RR42_RS04725 are separated by 10 nucleotides RR42_RS04710: RR42_RS04710 - 50S rRNA methyltransferase, at 1,049,443 to 1,049,913 _RS04710 RR42_RS04715: RR42_RS04715 - ribosome silencing factor RsfS, at 1,049,937 to 1,050,695 _RS04715 RR42_RS04720: RR42_RS04720 - nicotinate-nucleotide adenylyltransferase, at 1,050,711 to 1,051,481 _RS04720 RR42_RS04725: RR42_RS04725 - coproporphyrinogen III oxidase, at 1,051,492 to 1,052,403 _RS04725 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -1 0 1at 1049.772 kb on + strand, within RR42_RS04710at 1049.772 kb on + strand, within RR42_RS04710at 1049.773 kb on - strand, within RR42_RS04710at 1049.773 kb on - strand, within RR42_RS04710at 1050.173 kb on + strand, within RR42_RS04715at 1050.403 kb on + strand, within RR42_RS04715at 1050.403 kb on + strand, within RR42_RS04715at 1050.404 kb on - strand, within RR42_RS04715at 1050.404 kb on - strand, within RR42_RS04715at 1050.406 kb on + strand, within RR42_RS04715at 1050.407 kb on - strand, within RR42_RS04715at 1050.407 kb on - strand, within RR42_RS04715at 1050.622 kb on + strandat 1050.623 kb on - strandat 1050.623 kb on - strandat 1050.689 kb on + strandat 1050.690 kb on - strandat 1052.407 kb on - strandat 1052.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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1,049,772 + RR42_RS04710 0.70 -0.2
1,049,772 + RR42_RS04710 0.70 +0.2
1,049,773 - RR42_RS04710 0.70 -0.7
1,049,773 - RR42_RS04710 0.70 -0.1
1,050,173 + RR42_RS04715 0.31 -1.4
1,050,403 + RR42_RS04715 0.61 +0.5
1,050,403 + RR42_RS04715 0.61 -0.0
1,050,404 - RR42_RS04715 0.62 -0.2
1,050,404 - RR42_RS04715 0.62 -0.7
1,050,406 + RR42_RS04715 0.62 -0.5
1,050,407 - RR42_RS04715 0.62 +1.3
1,050,407 - RR42_RS04715 0.62 +0.2
1,050,622 + +0.1
1,050,623 - -1.5
1,050,623 - +1.6
1,050,689 + +1.1
1,050,690 - -0.7
1,052,407 - +0.2
1,052,407 - -0.6

Or see this region's nucleotide sequence