Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04335 and RR42_RS04340 are separated by 201 nucleotides RR42_RS04340 and RR42_RS04345 are separated by 208 nucleotides
RR42_RS04335: RR42_RS04335 - iron deficiency-induced protein A, at 962,849 to 963,892
_RS04335
RR42_RS04340: RR42_RS04340 - hypothetical protein, at 964,094 to 964,774
_RS04340
RR42_RS04345: RR42_RS04345 - iron ABC transporter permease, at 964,983 to 966,611
_RS04345
Position (kb) 964
965 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 963.200 kb on + strand, within RR42_RS04335 at 963.200 kb on + strand, within RR42_RS04335 at 963.257 kb on + strand, within RR42_RS04335 at 963.258 kb on - strand, within RR42_RS04335 at 963.259 kb on + strand, within RR42_RS04335 at 963.260 kb on - strand, within RR42_RS04335 at 963.260 kb on - strand, within RR42_RS04335 at 963.296 kb on + strand, within RR42_RS04335 at 963.360 kb on - strand, within RR42_RS04335 at 963.527 kb on + strand, within RR42_RS04335 at 963.527 kb on + strand, within RR42_RS04335 at 963.528 kb on - strand, within RR42_RS04335 at 963.530 kb on + strand, within RR42_RS04335 at 963.530 kb on + strand, within RR42_RS04335 at 963.530 kb on + strand, within RR42_RS04335 at 963.530 kb on + strand, within RR42_RS04335 at 963.531 kb on - strand, within RR42_RS04335 at 963.531 kb on - strand, within RR42_RS04335 at 963.531 kb on - strand, within RR42_RS04335 at 963.699 kb on - strand, within RR42_RS04335 at 963.726 kb on - strand, within RR42_RS04335 at 963.884 kb on + strand at 963.884 kb on + strand at 963.885 kb on - strand at 963.885 kb on - strand at 963.891 kb on - strand at 963.891 kb on - strand at 963.891 kb on - strand at 964.075 kb on + strand at 964.096 kb on - strand at 964.275 kb on + strand, within RR42_RS04340 at 964.346 kb on + strand, within RR42_RS04340 at 964.346 kb on + strand, within RR42_RS04340 at 964.347 kb on - strand, within RR42_RS04340 at 964.401 kb on + strand, within RR42_RS04340 at 964.402 kb on - strand, within RR42_RS04340 at 964.402 kb on - strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.774 kb on + strand at 964.774 kb on + strand at 964.774 kb on + strand at 964.774 kb on + strand at 964.774 kb on + strand at 964.774 kb on - strand at 964.922 kb on + strand at 964.923 kb on - strand at 964.985 kb on - strand at 965.113 kb on + strand at 965.114 kb on - strand at 965.114 kb on - strand at 965.366 kb on - strand, within RR42_RS04345 at 965.372 kb on - strand, within RR42_RS04345 at 965.512 kb on + strand, within RR42_RS04345 at 965.646 kb on - strand, within RR42_RS04345 at 965.761 kb on - strand, within RR42_RS04345
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 963,200 + RR42_RS04335 0.34 -0.1 963,200 + RR42_RS04335 0.34 +0.5 963,257 + RR42_RS04335 0.39 -1.4 963,258 - RR42_RS04335 0.39 -0.6 963,259 + RR42_RS04335 0.39 +0.0 963,260 - RR42_RS04335 0.39 -0.7 963,260 - RR42_RS04335 0.39 -0.8 963,296 + RR42_RS04335 0.43 +0.9 963,360 - RR42_RS04335 0.49 +1.3 963,527 + RR42_RS04335 0.65 +0.2 963,527 + RR42_RS04335 0.65 +1.3 963,528 - RR42_RS04335 0.65 -0.3 963,530 + RR42_RS04335 0.65 -0.7 963,530 + RR42_RS04335 0.65 -1.9 963,530 + RR42_RS04335 0.65 -0.4 963,530 + RR42_RS04335 0.65 +1.7 963,531 - RR42_RS04335 0.65 -1.2 963,531 - RR42_RS04335 0.65 -0.0 963,531 - RR42_RS04335 0.65 -1.6 963,699 - RR42_RS04335 0.81 +1.7 963,726 - RR42_RS04335 0.84 -0.7 963,884 + +0.1 963,884 + -0.1 963,885 - +1.3 963,885 - -0.3 963,891 - -1.2 963,891 - +1.8 963,891 - -0.4 964,075 + +0.6 964,096 - -0.1 964,275 + RR42_RS04340 0.27 -0.6 964,346 + RR42_RS04340 0.37 -1.4 964,346 + RR42_RS04340 0.37 -1.6 964,347 - RR42_RS04340 0.37 +0.7 964,401 + RR42_RS04340 0.45 -1.2 964,402 - RR42_RS04340 0.45 -0.6 964,402 - RR42_RS04340 0.45 +0.1 964,546 + RR42_RS04340 0.66 +0.2 964,546 + RR42_RS04340 0.66 +0.6 964,546 + RR42_RS04340 0.66 -0.2 964,546 + RR42_RS04340 0.66 -0.8 964,546 + RR42_RS04340 0.66 +0.2 964,546 + RR42_RS04340 0.66 -3.3 964,774 + +1.1 964,774 + +0.4 964,774 + -0.3 964,774 + -0.1 964,774 + -1.1 964,774 - +0.5 964,922 + +0.3 964,923 - +0.1 964,985 - -1.2 965,113 + -0.4 965,114 - -1.7 965,114 - -0.8 965,366 - RR42_RS04345 0.24 -0.8 965,372 - RR42_RS04345 0.24 -0.7 965,512 + RR42_RS04345 0.32 +0.2 965,646 - RR42_RS04345 0.41 -0.9 965,761 - RR42_RS04345 0.48 -0.7
Or see this region's nucleotide sequence