Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04140 and RR42_RS04145 are separated by 107 nucleotides RR42_RS04145 and RR42_RS04150 are separated by 64 nucleotides RR42_RS04150 and RR42_RS04155 are separated by 165 nucleotides
RR42_RS04140: RR42_RS04140 - ATPase, at 915,412 to 916,770
_RS04140
RR42_RS04145: RR42_RS04145 - peptidase A24, at 916,878 to 917,426
_RS04145
RR42_RS04150: RR42_RS04150 - pilus assembly protein, at 917,491 to 917,649
_RS04150
RR42_RS04155: RR42_RS04155 - pilus assembly protein PilA, at 917,815 to 918,000
_RS04155
Position (kb) 916
917
918 Strain fitness (log2 ratio) -2
-1
0
1 at 915.896 kb on + strand, within RR42_RS04140 at 915.896 kb on + strand, within RR42_RS04140 at 915.897 kb on - strand, within RR42_RS04140 at 915.897 kb on - strand, within RR42_RS04140 at 915.918 kb on + strand, within RR42_RS04140 at 915.918 kb on + strand, within RR42_RS04140 at 915.919 kb on - strand, within RR42_RS04140 at 915.935 kb on + strand, within RR42_RS04140 at 915.936 kb on - strand, within RR42_RS04140 at 916.125 kb on + strand, within RR42_RS04140 at 916.184 kb on + strand, within RR42_RS04140 at 916.184 kb on + strand, within RR42_RS04140 at 916.185 kb on - strand, within RR42_RS04140 at 916.211 kb on + strand, within RR42_RS04140 at 916.212 kb on - strand, within RR42_RS04140 at 916.302 kb on + strand, within RR42_RS04140 at 916.303 kb on - strand, within RR42_RS04140 at 916.358 kb on + strand, within RR42_RS04140 at 916.392 kb on - strand, within RR42_RS04140 at 916.392 kb on - strand, within RR42_RS04140 at 916.610 kb on - strand, within RR42_RS04140 at 916.992 kb on - strand, within RR42_RS04145 at 917.200 kb on + strand, within RR42_RS04145 at 917.566 kb on + strand, within RR42_RS04150 at 917.657 kb on - strand at 917.657 kb on - strand at 917.809 kb on + strand at 918.152 kb on - strand at 918.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 915,896 + RR42_RS04140 0.36 -0.0 915,896 + RR42_RS04140 0.36 -0.6 915,897 - RR42_RS04140 0.36 -0.1 915,897 - RR42_RS04140 0.36 -0.3 915,918 + RR42_RS04140 0.37 +0.9 915,918 + RR42_RS04140 0.37 +0.7 915,919 - RR42_RS04140 0.37 -0.7 915,935 + RR42_RS04140 0.38 +0.7 915,936 - RR42_RS04140 0.39 +1.0 916,125 + RR42_RS04140 0.52 +0.6 916,184 + RR42_RS04140 0.57 +1.2 916,184 + RR42_RS04140 0.57 -0.3 916,185 - RR42_RS04140 0.57 -0.6 916,211 + RR42_RS04140 0.59 -1.0 916,212 - RR42_RS04140 0.59 -1.4 916,302 + RR42_RS04140 0.65 +1.0 916,303 - RR42_RS04140 0.66 +0.3 916,358 + RR42_RS04140 0.70 +0.1 916,392 - RR42_RS04140 0.72 -0.4 916,392 - RR42_RS04140 0.72 +0.2 916,610 - RR42_RS04140 0.88 -0.8 916,992 - RR42_RS04145 0.21 -0.5 917,200 + RR42_RS04145 0.59 -2.0 917,566 + RR42_RS04150 0.47 +0.6 917,657 - +0.2 917,657 - +0.1 917,809 + +0.7 918,152 - +0.5 918,247 + -0.7
Or see this region's nucleotide sequence