Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04080 and RR42_RS04085 are separated by 138 nucleotides RR42_RS04085 and RR42_RS04090 are separated by 241 nucleotides
RR42_RS04080: RR42_RS04080 - molecular chaperone GroEL, at 902,425 to 904,068
_RS04080
RR42_RS04085: RR42_RS04085 - metallophosphoesterase, at 904,207 to 904,995
_RS04085
RR42_RS04090: RR42_RS04090 - type II secretion system protein, at 905,237 to 906,187
_RS04090
Position (kb) 904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 904.067 kb on - strand at 904.067 kb on - strand at 904.100 kb on + strand at 904.116 kb on - strand at 904.116 kb on - strand at 904.161 kb on + strand at 904.175 kb on - strand at 904.208 kb on + strand at 904.208 kb on + strand at 904.209 kb on - strand at 904.223 kb on + strand at 904.274 kb on + strand at 904.274 kb on + strand at 904.274 kb on + strand at 904.329 kb on + strand, within RR42_RS04085 at 904.335 kb on + strand, within RR42_RS04085 at 904.336 kb on - strand, within RR42_RS04085 at 904.665 kb on - strand, within RR42_RS04085 at 904.815 kb on - strand, within RR42_RS04085 at 904.815 kb on - strand, within RR42_RS04085 at 904.839 kb on - strand, within RR42_RS04085 at 905.125 kb on + strand at 905.126 kb on - strand at 905.303 kb on + strand at 905.303 kb on + strand at 905.303 kb on + strand at 905.303 kb on + strand at 905.303 kb on + strand at 905.346 kb on - strand, within RR42_RS04090 at 905.886 kb on + strand, within RR42_RS04090 at 905.887 kb on - strand, within RR42_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 904,067 - +0.2 904,067 - +0.1 904,100 + +0.5 904,116 - +0.5 904,116 - +2.3 904,161 + +0.0 904,175 - +1.3 904,208 + +0.7 904,208 + +0.3 904,209 - -1.3 904,223 + +1.3 904,274 + -2.3 904,274 + -0.8 904,274 + +0.6 904,329 + RR42_RS04085 0.15 -0.7 904,335 + RR42_RS04085 0.16 -0.1 904,336 - RR42_RS04085 0.16 -2.8 904,665 - RR42_RS04085 0.58 -0.4 904,815 - RR42_RS04085 0.77 -0.6 904,815 - RR42_RS04085 0.77 -0.4 904,839 - RR42_RS04085 0.80 -1.3 905,125 + +1.0 905,126 - +0.5 905,303 + +1.3 905,303 + -0.6 905,303 + -0.5 905,303 + +0.1 905,303 + -0.7 905,346 - RR42_RS04090 0.11 +0.0 905,886 + RR42_RS04090 0.68 -0.7 905,887 - RR42_RS04090 0.68 -1.8
Or see this region's nucleotide sequence