Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03720 and RR42_RS03725 are separated by 117 nucleotides RR42_RS03725 and RR42_RS03730 are separated by 82 nucleotides
RR42_RS03720: RR42_RS03720 - heat-shock protein, at 820,218 to 821,471
_RS03720
RR42_RS03725: RR42_RS03725 - magnesium transporter CorA, at 821,589 to 822,608
_RS03725
RR42_RS03730: RR42_RS03730 - polyphosphate kinase, at 822,691 to 823,608
_RS03730
Position (kb) 821
822
823 Strain fitness (log2 ratio) -1
0
1
2 at 820.692 kb on + strand, within RR42_RS03720 at 820.692 kb on + strand, within RR42_RS03720 at 820.719 kb on + strand, within RR42_RS03720 at 820.720 kb on - strand, within RR42_RS03720 at 820.972 kb on - strand, within RR42_RS03720 at 821.545 kb on + strand at 821.545 kb on + strand at 821.546 kb on - strand at 821.546 kb on - strand at 821.617 kb on - strand at 821.766 kb on - strand, within RR42_RS03725 at 821.901 kb on + strand, within RR42_RS03725 at 821.902 kb on - strand, within RR42_RS03725 at 821.902 kb on - strand, within RR42_RS03725 at 822.604 kb on - strand at 822.687 kb on - strand at 822.748 kb on + strand at 822.749 kb on - strand at 822.853 kb on + strand, within RR42_RS03730 at 823.053 kb on + strand, within RR42_RS03730 at 823.076 kb on - strand, within RR42_RS03730 at 823.180 kb on + strand, within RR42_RS03730 at 823.372 kb on + strand, within RR42_RS03730 at 823.373 kb on - strand, within RR42_RS03730 at 823.411 kb on - strand, within RR42_RS03730 at 823.501 kb on + strand, within RR42_RS03730 at 823.559 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 820,692 + RR42_RS03720 0.38 +0.7 820,692 + RR42_RS03720 0.38 +0.3 820,719 + RR42_RS03720 0.40 -0.7 820,720 - RR42_RS03720 0.40 -1.4 820,972 - RR42_RS03720 0.60 -0.9 821,545 + +0.6 821,545 + +0.5 821,546 - -1.7 821,546 - -0.5 821,617 - -0.5 821,766 - RR42_RS03725 0.17 +0.7 821,901 + RR42_RS03725 0.31 +1.2 821,902 - RR42_RS03725 0.31 +0.6 821,902 - RR42_RS03725 0.31 +0.2 822,604 - +0.5 822,687 - +0.4 822,748 + -0.3 822,749 - +0.3 822,853 + RR42_RS03730 0.18 +0.6 823,053 + RR42_RS03730 0.39 -0.4 823,076 - RR42_RS03730 0.42 +2.5 823,180 + RR42_RS03730 0.53 -0.7 823,372 + RR42_RS03730 0.74 -0.8 823,373 - RR42_RS03730 0.74 +0.3 823,411 - RR42_RS03730 0.78 -0.4 823,501 + RR42_RS03730 0.88 +1.0 823,559 - -0.1
Or see this region's nucleotide sequence