Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03220

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03215 and RR42_RS03220 are separated by 186 nucleotidesRR42_RS03220 and RR42_RS03225 are separated by 61 nucleotidesRR42_RS03225 and RR42_RS03230 are separated by 59 nucleotides RR42_RS03215: RR42_RS03215 - fructose-bisphosphate aldolase, at 712,246 to 713,310 _RS03215 RR42_RS03220: RR42_RS03220 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 713,497 to 714,405 _RS03220 RR42_RS03225: RR42_RS03225 - N5-carboxyaminoimidazole ribonucleotide mutase, at 714,467 to 714,964 _RS03225 RR42_RS03230: RR42_RS03230 - phosphoribosylaminoimidazole carboxylase, at 715,024 to 716,268 _RS03230 Position (kb) 713 714 715Strain fitness (log2 ratio) -2 -1 0 1at 713.308 kb on + strandat 714.451 kb on + strandat 714.451 kb on + strandat 714.455 kb on + strandat 714.962 kb on + strandat 714.965 kb on + strandat 714.965 kb on + strandat 714.965 kb on + strandat 714.965 kb on + strandat 714.965 kb on + strandat 714.965 kb on + strandat 714.983 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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713,308 + -0.0
714,451 + -0.0
714,451 + -2.1
714,455 + -0.3
714,962 + +0.4
714,965 + -0.6
714,965 + +0.0
714,965 + -0.3
714,965 + -0.6
714,965 + -2.1
714,965 + +1.7
714,983 + -0.0

Or see this region's nucleotide sequence