Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03030 and RR42_RS03035 overlap by 4 nucleotides RR42_RS03035 and RR42_RS03040 overlap by 4 nucleotides RR42_RS03040 and RR42_RS03045 are separated by 110 nucleotides
RR42_RS03030: RR42_RS03030 - required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) <small>(from data)</small>, at 671,455 to 671,664
_RS03030
RR42_RS03035: RR42_RS03035 - membrane protein, at 671,661 to 672,629
_RS03035
RR42_RS03040: RR42_RS03040 - Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) <small>(from data)</small>, at 672,626 to 674,089
_RS03040
RR42_RS03045: RR42_RS03045 - dioxygenase, at 674,200 to 675,021
_RS03045
Position (kb) 672
673
674
675 Strain fitness (log2 ratio) -1
0
1
2
3 at 671.639 kb on - strand, within RR42_RS03030 at 671.639 kb on - strand, within RR42_RS03030 at 671.678 kb on + strand at 671.699 kb on + strand at 671.752 kb on - strand at 671.754 kb on + strand at 671.754 kb on + strand at 672.147 kb on + strand, within RR42_RS03035 at 672.704 kb on + strand at 672.704 kb on + strand at 672.818 kb on + strand, within RR42_RS03040 at 673.181 kb on + strand, within RR42_RS03040 at 673.182 kb on - strand, within RR42_RS03040 at 673.182 kb on - strand, within RR42_RS03040 at 673.182 kb on - strand, within RR42_RS03040 at 673.333 kb on - strand, within RR42_RS03040 at 673.436 kb on + strand, within RR42_RS03040 at 673.814 kb on + strand, within RR42_RS03040 at 673.815 kb on - strand, within RR42_RS03040 at 673.897 kb on - strand, within RR42_RS03040 at 673.897 kb on - strand, within RR42_RS03040 at 673.897 kb on - strand, within RR42_RS03040 at 673.898 kb on + strand, within RR42_RS03040 at 673.898 kb on + strand, within RR42_RS03040 at 673.898 kb on + strand, within RR42_RS03040 at 673.899 kb on - strand, within RR42_RS03040 at 673.919 kb on + strand, within RR42_RS03040 at 673.920 kb on - strand, within RR42_RS03040 at 674.127 kb on - strand at 674.216 kb on - strand at 674.407 kb on + strand, within RR42_RS03045 at 674.408 kb on - strand, within RR42_RS03045 at 674.408 kb on - strand, within RR42_RS03045 at 674.408 kb on - strand, within RR42_RS03045 at 674.473 kb on + strand, within RR42_RS03045 at 674.474 kb on - strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.533 kb on - strand, within RR42_RS03045 at 674.552 kb on - strand, within RR42_RS03045 at 674.552 kb on - strand, within RR42_RS03045 at 674.819 kb on - strand, within RR42_RS03045 at 674.969 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 671,639 - RR42_RS03030 0.88 +1.9 671,639 - RR42_RS03030 0.88 +0.4 671,678 + +0.1 671,699 + +0.8 671,752 - +1.3 671,754 + +0.4 671,754 + +0.4 672,147 + RR42_RS03035 0.50 +0.5 672,704 + +0.4 672,704 + +0.9 672,818 + RR42_RS03040 0.13 +2.5 673,181 + RR42_RS03040 0.38 +0.8 673,182 - RR42_RS03040 0.38 -0.2 673,182 - RR42_RS03040 0.38 -1.2 673,182 - RR42_RS03040 0.38 +0.9 673,333 - RR42_RS03040 0.48 +0.3 673,436 + RR42_RS03040 0.55 +0.5 673,814 + RR42_RS03040 0.81 +0.1 673,815 - RR42_RS03040 0.81 +1.5 673,897 - RR42_RS03040 0.87 +0.9 673,897 - RR42_RS03040 0.87 +0.1 673,897 - RR42_RS03040 0.87 +0.6 673,898 + RR42_RS03040 0.87 +0.8 673,898 + RR42_RS03040 0.87 +0.1 673,898 + RR42_RS03040 0.87 +0.3 673,899 - RR42_RS03040 0.87 +0.6 673,919 + RR42_RS03040 0.88 +1.2 673,920 - RR42_RS03040 0.88 +0.3 674,127 - -0.9 674,216 - -0.4 674,407 + RR42_RS03045 0.25 +3.2 674,408 - RR42_RS03045 0.25 +1.4 674,408 - RR42_RS03045 0.25 -1.3 674,408 - RR42_RS03045 0.25 +1.4 674,473 + RR42_RS03045 0.33 +2.4 674,474 - RR42_RS03045 0.33 -0.2 674,530 + RR42_RS03045 0.40 -0.8 674,530 + RR42_RS03045 0.40 +1.4 674,530 + RR42_RS03045 0.40 +0.9 674,530 + RR42_RS03045 0.40 -1.1 674,530 + RR42_RS03045 0.40 +0.6 674,531 - RR42_RS03045 0.40 +0.3 674,531 - RR42_RS03045 0.40 +0.3 674,531 - RR42_RS03045 0.40 +1.1 674,531 - RR42_RS03045 0.40 +0.1 674,531 - RR42_RS03045 0.40 -0.9 674,531 - RR42_RS03045 0.40 -0.0 674,531 - RR42_RS03045 0.40 +2.4 674,531 - RR42_RS03045 0.40 -0.6 674,532 + RR42_RS03045 0.40 -0.6 674,532 + RR42_RS03045 0.40 -0.3 674,532 + RR42_RS03045 0.40 +1.3 674,532 + RR42_RS03045 0.40 -1.6 674,532 + RR42_RS03045 0.40 +2.7 674,533 - RR42_RS03045 0.41 -0.7 674,552 - RR42_RS03045 0.43 -0.4 674,552 - RR42_RS03045 0.43 -1.4 674,819 - RR42_RS03045 0.75 +2.1 674,969 + +1.7
Or see this region's nucleotide sequence