Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02720

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02715 and RR42_RS02720 are separated by 526 nucleotidesRR42_RS02720 and RR42_RS02725 are separated by 17 nucleotidesRR42_RS02725 and RR42_RS02730 overlap by 4 nucleotides RR42_RS02715: RR42_RS02715 - Holliday junction DNA helicase, at 605,001 to 605,546 _RS02715 RR42_RS02720: RR42_RS02720 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 606,073 to 607,647 _RS02720 RR42_RS02725: RR42_RS02725 - Fis family transcriptional regulator, at 607,665 to 607,898 _RS02725 RR42_RS02730: RR42_RS02730 - tRNA-dihydrouridine synthase B, at 607,895 to 608,989 _RS02730 Position (kb) 606 607 608Strain fitness (log2 ratio) -1 0 1 2at 605.587 kb on + strandat 605.587 kb on + strandat 605.587 kb on + strandat 605.587 kb on + strandat 605.588 kb on - strandat 605.588 kb on - strandat 605.588 kb on - strandat 605.602 kb on - strandat 605.608 kb on + strandat 605.609 kb on - strandat 605.614 kb on + strandat 605.615 kb on - strandat 605.615 kb on - strandat 607.652 kb on - strandat 607.919 kb on - strandat 608.119 kb on - strand, within RR42_RS02730at 608.167 kb on - strand, within RR42_RS02730at 608.167 kb on - strand, within RR42_RS02730at 608.176 kb on - strand, within RR42_RS02730at 608.257 kb on - strand, within RR42_RS02730at 608.428 kb on - strand, within RR42_RS02730at 608.446 kb on - strand, within RR42_RS02730

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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605,587 + -0.9
605,587 + -0.6
605,587 + -0.7
605,587 + -0.2
605,588 - -0.5
605,588 - -1.2
605,588 - +0.6
605,602 - +0.4
605,608 + -0.5
605,609 - -1.6
605,614 + -1.1
605,615 - -0.5
605,615 - +0.6
607,652 - -0.4
607,919 - +1.2
608,119 - RR42_RS02730 0.20 +0.1
608,167 - RR42_RS02730 0.25 -0.2
608,167 - RR42_RS02730 0.25 -0.9
608,176 - RR42_RS02730 0.26 -0.4
608,257 - RR42_RS02730 0.33 -0.6
608,428 - RR42_RS02730 0.49 +1.0
608,446 - RR42_RS02730 0.50 +2.4

Or see this region's nucleotide sequence