Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02605 and RR42_RS02610 are separated by 46 nucleotides RR42_RS02610 and RR42_RS02615 are separated by 50 nucleotides
RR42_RS02605: RR42_RS02605 - hydroxypyruvate reductase, at 584,484 to 585,803
_RS02605
RR42_RS02610: RR42_RS02610 - dihydroorotase, at 585,850 to 586,884
_RS02610
RR42_RS02615: RR42_RS02615 - membrane protein, at 586,935 to 587,765
_RS02615
Position (kb) 585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 584.969 kb on + strand, within RR42_RS02605 at 584.970 kb on - strand, within RR42_RS02605 at 584.970 kb on - strand, within RR42_RS02605 at 584.975 kb on + strand, within RR42_RS02605 at 585.119 kb on + strand, within RR42_RS02605 at 585.123 kb on + strand, within RR42_RS02605 at 585.123 kb on + strand, within RR42_RS02605 at 585.123 kb on + strand, within RR42_RS02605 at 585.123 kb on + strand, within RR42_RS02605 at 585.124 kb on - strand, within RR42_RS02605 at 585.124 kb on - strand, within RR42_RS02605 at 585.124 kb on - strand, within RR42_RS02605 at 585.186 kb on + strand, within RR42_RS02605 at 585.186 kb on + strand, within RR42_RS02605 at 585.187 kb on - strand, within RR42_RS02605 at 585.388 kb on - strand, within RR42_RS02605 at 585.410 kb on - strand, within RR42_RS02605 at 585.410 kb on - strand, within RR42_RS02605 at 585.417 kb on + strand, within RR42_RS02605 at 585.417 kb on + strand, within RR42_RS02605 at 585.418 kb on - strand, within RR42_RS02605 at 585.572 kb on + strand, within RR42_RS02605 at 585.572 kb on + strand, within RR42_RS02605 at 585.572 kb on + strand, within RR42_RS02605 at 585.573 kb on - strand, within RR42_RS02605 at 585.573 kb on - strand, within RR42_RS02605 at 585.573 kb on - strand, within RR42_RS02605 at 585.580 kb on - strand, within RR42_RS02605 at 585.580 kb on - strand, within RR42_RS02605 at 585.580 kb on - strand, within RR42_RS02605 at 585.623 kb on + strand, within RR42_RS02605 at 585.780 kb on + strand at 585.801 kb on + strand at 585.801 kb on + strand at 586.883 kb on - strand at 587.143 kb on - strand, within RR42_RS02615 at 587.153 kb on + strand, within RR42_RS02615 at 587.153 kb on + strand, within RR42_RS02615 at 587.154 kb on - strand, within RR42_RS02615 at 587.154 kb on - strand, within RR42_RS02615 at 587.157 kb on + strand, within RR42_RS02615 at 587.157 kb on + strand, within RR42_RS02615 at 587.158 kb on - strand, within RR42_RS02615 at 587.526 kb on + strand, within RR42_RS02615 at 587.526 kb on + strand, within RR42_RS02615 at 587.526 kb on + strand, within RR42_RS02615 at 587.526 kb on + strand, within RR42_RS02615 at 587.526 kb on + strand, within RR42_RS02615 at 587.526 kb on + strand, within RR42_RS02615 at 587.526 kb on + strand, within RR42_RS02615 at 587.527 kb on - strand, within RR42_RS02615 at 587.527 kb on - strand, within RR42_RS02615 at 587.527 kb on - strand, within RR42_RS02615 at 587.528 kb on + strand, within RR42_RS02615 at 587.528 kb on + strand, within RR42_RS02615 at 587.528 kb on + strand, within RR42_RS02615 at 587.528 kb on + strand, within RR42_RS02615 at 587.529 kb on - strand, within RR42_RS02615 at 587.529 kb on - strand, within RR42_RS02615 at 587.529 kb on - strand, within RR42_RS02615 at 587.529 kb on - strand, within RR42_RS02615 at 587.529 kb on - strand, within RR42_RS02615 at 587.712 kb on + strand at 587.712 kb on + strand at 587.713 kb on - strand at 587.715 kb on + strand at 587.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 584,969 + RR42_RS02605 0.37 -1.6 584,970 - RR42_RS02605 0.37 +0.8 584,970 - RR42_RS02605 0.37 +1.0 584,975 + RR42_RS02605 0.37 -2.5 585,119 + RR42_RS02605 0.48 -0.1 585,123 + RR42_RS02605 0.48 -0.4 585,123 + RR42_RS02605 0.48 +0.4 585,123 + RR42_RS02605 0.48 -0.1 585,123 + RR42_RS02605 0.48 -0.1 585,124 - RR42_RS02605 0.48 -1.4 585,124 - RR42_RS02605 0.48 +0.4 585,124 - RR42_RS02605 0.48 -1.1 585,186 + RR42_RS02605 0.53 -0.7 585,186 + RR42_RS02605 0.53 +0.4 585,187 - RR42_RS02605 0.53 -0.0 585,388 - RR42_RS02605 0.68 +0.2 585,410 - RR42_RS02605 0.70 +1.4 585,410 - RR42_RS02605 0.70 -0.1 585,417 + RR42_RS02605 0.71 -1.9 585,417 + RR42_RS02605 0.71 +0.8 585,418 - RR42_RS02605 0.71 -0.7 585,572 + RR42_RS02605 0.82 -1.3 585,572 + RR42_RS02605 0.82 -0.1 585,572 + RR42_RS02605 0.82 -0.4 585,573 - RR42_RS02605 0.82 -0.9 585,573 - RR42_RS02605 0.82 -0.6 585,573 - RR42_RS02605 0.82 +0.4 585,580 - RR42_RS02605 0.83 -1.3 585,580 - RR42_RS02605 0.83 -0.4 585,580 - RR42_RS02605 0.83 -0.4 585,623 + RR42_RS02605 0.86 -0.1 585,780 + +1.3 585,801 + -0.1 585,801 + +0.0 586,883 - -0.7 587,143 - RR42_RS02615 0.25 +0.6 587,153 + RR42_RS02615 0.26 +0.1 587,153 + RR42_RS02615 0.26 -0.5 587,154 - RR42_RS02615 0.26 +0.1 587,154 - RR42_RS02615 0.26 +0.5 587,157 + RR42_RS02615 0.27 +2.6 587,157 + RR42_RS02615 0.27 -0.1 587,158 - RR42_RS02615 0.27 -0.1 587,526 + RR42_RS02615 0.71 -1.0 587,526 + RR42_RS02615 0.71 +0.3 587,526 + RR42_RS02615 0.71 +1.7 587,526 + RR42_RS02615 0.71 -0.2 587,526 + RR42_RS02615 0.71 -0.4 587,526 + RR42_RS02615 0.71 +0.1 587,526 + RR42_RS02615 0.71 -0.4 587,527 - RR42_RS02615 0.71 +1.8 587,527 - RR42_RS02615 0.71 +0.5 587,527 - RR42_RS02615 0.71 +0.4 587,528 + RR42_RS02615 0.71 -2.1 587,528 + RR42_RS02615 0.71 +0.2 587,528 + RR42_RS02615 0.71 -0.0 587,528 + RR42_RS02615 0.71 -0.2 587,529 - RR42_RS02615 0.71 +0.9 587,529 - RR42_RS02615 0.71 -0.5 587,529 - RR42_RS02615 0.71 +2.2 587,529 - RR42_RS02615 0.71 -0.3 587,529 - RR42_RS02615 0.71 +0.1 587,712 + +1.0 587,712 + -0.4 587,713 - -0.2 587,715 + -0.3 587,716 - -0.1
Or see this region's nucleotide sequence