Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02015

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02010 and RR42_RS02015 are separated by 121 nucleotidesRR42_RS02015 and RR42_RS02020 are separated by 97 nucleotidesRR42_RS02020 and RR42_RS02025 are separated by 59 nucleotides RR42_RS02010: RR42_RS02010 - 50S ribosomal protein L25, at 448,740 to 449,342 _RS02010 RR42_RS02015: RR42_RS02015 - ribose-phosphate pyrophosphokinase, at 449,464 to 450,417 _RS02015 RR42_RS02020: RR42_RS02020 - tRNA-Gln, at 450,515 to 450,591 _RS02020 RR42_RS02025: RR42_RS02025 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 450,651 to 451,529 _RS02025 Position (kb) 449 450 451Strain fitness (log2 ratio) -1 0 1at 448.567 kb on + strandat 448.634 kb on + strandat 448.635 kb on - strandat 450.513 kb on - strandat 450.513 kb on - strandat 450.513 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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448,567 + +0.3
448,634 + -0.6
448,635 - -0.8
450,513 - -1.5
450,513 - -1.1
450,513 - +0.8

Or see this region's nucleotide sequence