Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01260 and RR42_RS01265 are separated by 385 nucleotides RR42_RS01265 and RR42_RS01270 are separated by 332 nucleotides
RR42_RS01260: RR42_RS01260 - lauroyl acyltransferase, at 284,503 to 285,441
_RS01260
RR42_RS01265: RR42_RS01265 - S-adenosylmethionine synthetase, at 285,827 to 286,990
_RS01265
RR42_RS01270: RR42_RS01270 - 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase, at 287,323 to 288,198
_RS01270
Position (kb) 285
286
287 Strain fitness (log2 ratio) -1
0
1 at 285.057 kb on - strand, within RR42_RS01260 at 285.198 kb on - strand, within RR42_RS01260 at 285.198 kb on - strand, within RR42_RS01260 at 285.198 kb on - strand, within RR42_RS01260 at 285.234 kb on - strand, within RR42_RS01260 at 285.481 kb on - strand at 285.481 kb on - strand at 285.481 kb on - strand at 285.537 kb on - strand at 285.537 kb on - strand at 285.551 kb on - strand at 285.689 kb on - strand at 285.760 kb on + strand at 285.766 kb on + strand at 285.787 kb on + strand at 285.787 kb on + strand at 286.988 kb on + strand at 286.988 kb on + strand at 287.132 kb on + strand at 287.259 kb on + strand at 287.341 kb on + strand at 287.341 kb on + strand at 287.343 kb on + strand at 287.343 kb on + strand at 287.344 kb on - strand at 287.344 kb on - strand at 287.572 kb on + strand, within RR42_RS01270 at 287.572 kb on + strand, within RR42_RS01270 at 287.572 kb on + strand, within RR42_RS01270 at 287.573 kb on - strand, within RR42_RS01270 at 287.573 kb on - strand, within RR42_RS01270 at 287.573 kb on - strand, within RR42_RS01270 at 287.600 kb on - strand, within RR42_RS01270 at 287.600 kb on - strand, within RR42_RS01270 at 287.647 kb on - strand, within RR42_RS01270 at 287.647 kb on - strand, within RR42_RS01270 at 287.647 kb on - strand, within RR42_RS01270 at 287.913 kb on + strand, within RR42_RS01270 at 287.913 kb on + strand, within RR42_RS01270 at 287.913 kb on + strand, within RR42_RS01270 at 287.914 kb on - strand, within RR42_RS01270 at 287.914 kb on - strand, within RR42_RS01270 at 287.938 kb on + strand, within RR42_RS01270 at 287.938 kb on + strand, within RR42_RS01270 at 287.939 kb on - strand, within RR42_RS01270 at 287.989 kb on + strand, within RR42_RS01270 at 287.990 kb on - strand, within RR42_RS01270 at 287.990 kb on - strand, within RR42_RS01270
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 285,057 - RR42_RS01260 0.59 +0.6 285,198 - RR42_RS01260 0.74 -1.0 285,198 - RR42_RS01260 0.74 -0.3 285,198 - RR42_RS01260 0.74 -0.1 285,234 - RR42_RS01260 0.78 -0.7 285,481 - +0.2 285,481 - +0.4 285,481 - -1.5 285,537 - +1.6 285,537 - +0.6 285,551 - -0.0 285,689 - -0.0 285,760 + +0.5 285,766 + -1.1 285,787 + +0.6 285,787 + -0.4 286,988 + -0.2 286,988 + +0.5 287,132 + -0.0 287,259 + +0.6 287,341 + -0.4 287,341 + +0.6 287,343 + -0.0 287,343 + +1.2 287,344 - +0.4 287,344 - +0.1 287,572 + RR42_RS01270 0.28 +1.0 287,572 + RR42_RS01270 0.28 -0.3 287,572 + RR42_RS01270 0.28 -0.1 287,573 - RR42_RS01270 0.29 -0.4 287,573 - RR42_RS01270 0.29 -0.6 287,573 - RR42_RS01270 0.29 +1.2 287,600 - RR42_RS01270 0.32 +0.3 287,600 - RR42_RS01270 0.32 -1.0 287,647 - RR42_RS01270 0.37 +0.1 287,647 - RR42_RS01270 0.37 -1.4 287,647 - RR42_RS01270 0.37 +0.9 287,913 + RR42_RS01270 0.67 -0.0 287,913 + RR42_RS01270 0.67 +1.6 287,913 + RR42_RS01270 0.67 +0.4 287,914 - RR42_RS01270 0.67 -0.4 287,914 - RR42_RS01270 0.67 +0.1 287,938 + RR42_RS01270 0.70 -0.0 287,938 + RR42_RS01270 0.70 +0.7 287,939 - RR42_RS01270 0.70 -0.7 287,989 + RR42_RS01270 0.76 +0.5 287,990 - RR42_RS01270 0.76 -0.1 287,990 - RR42_RS01270 0.76 +0.1
Or see this region's nucleotide sequence