Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00935

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00930 and RR42_RS00935 overlap by 4 nucleotidesRR42_RS00935 and RR42_RS00940 are separated by 57 nucleotides RR42_RS00930: RR42_RS00930 - 8-amino-7-oxononanoate synthase, at 222,278 to 223,495 _RS00930 RR42_RS00935: RR42_RS00935 - dethiobiotin synthetase, at 223,492 to 224,214 _RS00935 RR42_RS00940: RR42_RS00940 - biotin synthase, at 224,272 to 225,318 _RS00940 Position (kb) 223 224 225Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 222.614 kb on + strand, within RR42_RS00930at 222.629 kb on + strand, within RR42_RS00930at 222.629 kb on + strand, within RR42_RS00930at 222.629 kb on + strand, within RR42_RS00930at 222.631 kb on + strand, within RR42_RS00930at 222.631 kb on + strand, within RR42_RS00930at 222.632 kb on - strand, within RR42_RS00930at 222.632 kb on - strand, within RR42_RS00930at 222.632 kb on - strand, within RR42_RS00930at 222.661 kb on - strand, within RR42_RS00930at 222.998 kb on + strand, within RR42_RS00930at 222.998 kb on + strand, within RR42_RS00930at 222.998 kb on + strand, within RR42_RS00930at 222.998 kb on + strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 223.094 kb on + strand, within RR42_RS00930at 223.094 kb on + strand, within RR42_RS00930at 223.094 kb on + strand, within RR42_RS00930at 223.095 kb on - strand, within RR42_RS00930at 223.100 kb on + strand, within RR42_RS00930at 223.100 kb on + strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 224.252 kb on + strandat 224.410 kb on + strand, within RR42_RS00940at 224.410 kb on + strand, within RR42_RS00940at 224.810 kb on - strand, within RR42_RS00940at 224.812 kb on + strand, within RR42_RS00940at 224.812 kb on + strand, within RR42_RS00940at 224.813 kb on - strand, within RR42_RS00940at 224.813 kb on - strand, within RR42_RS00940at 224.813 kb on - strand, within RR42_RS00940at 224.829 kb on + strand, within RR42_RS00940at 224.845 kb on + strand, within RR42_RS00940at 224.846 kb on - strand, within RR42_RS00940at 224.846 kb on - strand, within RR42_RS00940at 224.872 kb on + strand, within RR42_RS00940at 224.873 kb on - strand, within RR42_RS00940at 224.873 kb on - strand, within RR42_RS00940at 224.873 kb on - strand, within RR42_RS00940

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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222,614 + RR42_RS00930 0.28 +0.8
222,629 + RR42_RS00930 0.29 +0.4
222,629 + RR42_RS00930 0.29 -1.0
222,629 + RR42_RS00930 0.29 +0.8
222,631 + RR42_RS00930 0.29 -0.9
222,631 + RR42_RS00930 0.29 -0.8
222,632 - RR42_RS00930 0.29 -2.5
222,632 - RR42_RS00930 0.29 -1.8
222,632 - RR42_RS00930 0.29 -1.2
222,661 - RR42_RS00930 0.31 -3.3
222,998 + RR42_RS00930 0.59 -0.2
222,998 + RR42_RS00930 0.59 -1.0
222,998 + RR42_RS00930 0.59 -0.4
222,998 + RR42_RS00930 0.59 -0.7
222,999 - RR42_RS00930 0.59 -1.8
222,999 - RR42_RS00930 0.59 -1.4
222,999 - RR42_RS00930 0.59 -1.1
222,999 - RR42_RS00930 0.59 -1.5
222,999 - RR42_RS00930 0.59 -2.3
222,999 - RR42_RS00930 0.59 -0.8
222,999 - RR42_RS00930 0.59 -2.1
222,999 - RR42_RS00930 0.59 -2.9
222,999 - RR42_RS00930 0.59 -2.9
222,999 - RR42_RS00930 0.59 -4.0
223,094 + RR42_RS00930 0.67 -0.1
223,094 + RR42_RS00930 0.67 -0.4
223,094 + RR42_RS00930 0.67 -0.8
223,095 - RR42_RS00930 0.67 +0.6
223,100 + RR42_RS00930 0.67 -1.6
223,100 + RR42_RS00930 0.67 -0.1
223,101 - RR42_RS00930 0.68 -1.8
223,101 - RR42_RS00930 0.68 -1.8
223,101 - RR42_RS00930 0.68 +1.0
223,101 - RR42_RS00930 0.68 -1.4
223,101 - RR42_RS00930 0.68 -3.6
223,101 - RR42_RS00930 0.68 -1.1
224,252 + -0.0
224,410 + RR42_RS00940 0.13 -3.0
224,410 + RR42_RS00940 0.13 -2.8
224,810 - RR42_RS00940 0.51 +0.6
224,812 + RR42_RS00940 0.52 -3.3
224,812 + RR42_RS00940 0.52 -1.9
224,813 - RR42_RS00940 0.52 -2.5
224,813 - RR42_RS00940 0.52 -2.7
224,813 - RR42_RS00940 0.52 -1.7
224,829 + RR42_RS00940 0.53 -1.6
224,845 + RR42_RS00940 0.55 -2.9
224,846 - RR42_RS00940 0.55 -2.2
224,846 - RR42_RS00940 0.55 -1.4
224,872 + RR42_RS00940 0.57 -0.6
224,873 - RR42_RS00940 0.57 -3.2
224,873 - RR42_RS00940 0.57 -1.7
224,873 - RR42_RS00940 0.57 -2.3

Or see this region's nucleotide sequence