Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00585 and RR42_RS00590 are separated by 95 nucleotides RR42_RS00590 and RR42_RS00595 overlap by 4 nucleotides RR42_RS00595 and RR42_RS00600 overlap by 4 nucleotides
RR42_RS00585: RR42_RS00585 - glutamyl-tRNA amidotransferase, at 155,513 to 155,812
_RS00585
RR42_RS00590: RR42_RS00590 - glutamyl-tRNA amidotransferase, at 155,908 to 157,413
_RS00590
RR42_RS00595: RR42_RS00595 - lipoprotein, at 157,410 to 157,877
_RS00595
RR42_RS00600: RR42_RS00600 - DeoR family transcriptional regulator, at 157,874 to 158,845
_RS00600
Position (kb) 155
156
157
158 Strain fitness (log2 ratio) -1
0
1
2 at 154.951 kb on - strand at 155.137 kb on - strand at 155.380 kb on + strand at 155.381 kb on - strand at 155.382 kb on + strand at 155.382 kb on + strand at 155.810 kb on + strand at 157.703 kb on + strand, within RR42_RS00595 at 157.703 kb on + strand, within RR42_RS00595 at 157.815 kb on + strand, within RR42_RS00595 at 157.815 kb on + strand, within RR42_RS00595 at 157.815 kb on + strand, within RR42_RS00595
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 154,951 - +0.7 155,137 - +0.6 155,380 + -0.4 155,381 - -0.6 155,382 + +1.6 155,382 + -0.0 155,810 + +0.2 157,703 + RR42_RS00595 0.63 -0.1 157,703 + RR42_RS00595 0.63 +0.5 157,815 + RR42_RS00595 0.87 +2.0 157,815 + RR42_RS00595 0.87 +0.6 157,815 + RR42_RS00595 0.87 +0.2
Or see this region's nucleotide sequence