Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05526

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05525 and H281DRAFT_05526 are separated by 177 nucleotidesH281DRAFT_05526 and H281DRAFT_05527 are separated by 278 nucleotidesH281DRAFT_05527 and H281DRAFT_05528 are separated by 18 nucleotides H281DRAFT_05525: H281DRAFT_05525 - Short-chain dehydrogenases of various substrate specificities, at 108,663 to 109,538 _05525 H281DRAFT_05526: H281DRAFT_05526 - DNA-binding transcriptional regulator, MerR family, at 109,716 to 110,063 _05526 H281DRAFT_05527: H281DRAFT_05527 - transcriptional regulator, TetR family, at 110,342 to 110,992 _05527 H281DRAFT_05528: H281DRAFT_05528 - hypothetical protein, at 111,011 to 111,364 _05528 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1 2at 108.744 kb on + strandat 108.763 kb on + strand, within H281DRAFT_05525at 108.763 kb on + strand, within H281DRAFT_05525at 108.764 kb on - strand, within H281DRAFT_05525at 108.908 kb on + strand, within H281DRAFT_05525at 108.908 kb on + strand, within H281DRAFT_05525at 108.909 kb on - strand, within H281DRAFT_05525at 108.909 kb on - strand, within H281DRAFT_05525at 108.909 kb on - strand, within H281DRAFT_05525at 108.916 kb on + strand, within H281DRAFT_05525at 108.917 kb on - strand, within H281DRAFT_05525at 109.067 kb on + strand, within H281DRAFT_05525at 109.068 kb on - strand, within H281DRAFT_05525at 109.068 kb on - strand, within H281DRAFT_05525at 109.078 kb on + strand, within H281DRAFT_05525at 109.079 kb on - strand, within H281DRAFT_05525at 109.122 kb on + strand, within H281DRAFT_05525at 109.123 kb on - strand, within H281DRAFT_05525at 109.123 kb on - strand, within H281DRAFT_05525at 109.123 kb on - strand, within H281DRAFT_05525at 109.123 kb on - strand, within H281DRAFT_05525at 109.123 kb on - strand, within H281DRAFT_05525at 109.143 kb on - strand, within H281DRAFT_05525at 109.385 kb on - strand, within H281DRAFT_05525at 109.385 kb on - strand, within H281DRAFT_05525at 109.509 kb on + strandat 109.530 kb on + strandat 109.530 kb on + strandat 109.531 kb on - strandat 109.538 kb on + strandat 109.539 kb on - strandat 109.584 kb on + strandat 109.584 kb on + strandat 109.585 kb on - strandat 109.585 kb on - strandat 109.773 kb on + strand, within H281DRAFT_05526at 109.774 kb on - strand, within H281DRAFT_05526at 109.774 kb on - strand, within H281DRAFT_05526at 109.791 kb on - strand, within H281DRAFT_05526at 109.828 kb on - strand, within H281DRAFT_05526at 109.859 kb on + strand, within H281DRAFT_05526at 109.860 kb on - strand, within H281DRAFT_05526at 110.014 kb on + strand, within H281DRAFT_05526at 110.062 kb on - strandat 110.150 kb on + strandat 110.168 kb on + strandat 110.181 kb on + strandat 110.182 kb on - strandat 110.182 kb on - strandat 110.306 kb on - strandat 110.313 kb on + strandat 110.314 kb on - strandat 110.344 kb on - strandat 110.388 kb on + strandat 110.388 kb on + strandat 110.388 kb on + strandat 110.388 kb on + strandat 110.388 kb on + strandat 110.388 kb on + strandat 110.388 kb on + strandat 110.389 kb on - strandat 110.785 kb on - strand, within H281DRAFT_05527at 110.785 kb on - strand, within H281DRAFT_05527at 110.809 kb on - strand, within H281DRAFT_05527at 110.814 kb on + strand, within H281DRAFT_05527at 110.831 kb on - strand, within H281DRAFT_05527at 110.914 kb on + strand, within H281DRAFT_05527at 111.022 kb on + strandat 111.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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108,744 + +0.8
108,763 + H281DRAFT_05525 0.11 -0.5
108,763 + H281DRAFT_05525 0.11 +0.4
108,764 - H281DRAFT_05525 0.12 +0.7
108,908 + H281DRAFT_05525 0.28 +0.7
108,908 + H281DRAFT_05525 0.28 +0.1
108,909 - H281DRAFT_05525 0.28 +0.1
108,909 - H281DRAFT_05525 0.28 +1.0
108,909 - H281DRAFT_05525 0.28 +0.5
108,916 + H281DRAFT_05525 0.29 +0.5
108,917 - H281DRAFT_05525 0.29 +1.0
109,067 + H281DRAFT_05525 0.46 -0.6
109,068 - H281DRAFT_05525 0.46 +0.4
109,068 - H281DRAFT_05525 0.46 +0.1
109,078 + H281DRAFT_05525 0.47 -0.4
109,079 - H281DRAFT_05525 0.47 +0.2
109,122 + H281DRAFT_05525 0.52 +0.0
109,123 - H281DRAFT_05525 0.53 +0.8
109,123 - H281DRAFT_05525 0.53 -0.6
109,123 - H281DRAFT_05525 0.53 +0.4
109,123 - H281DRAFT_05525 0.53 -0.2
109,123 - H281DRAFT_05525 0.53 +0.3
109,143 - H281DRAFT_05525 0.55 +0.5
109,385 - H281DRAFT_05525 0.82 +0.7
109,385 - H281DRAFT_05525 0.82 +0.0
109,509 + -0.7
109,530 + +2.2
109,530 + -0.2
109,531 - -0.0
109,538 + +0.4
109,539 - -0.1
109,584 + -0.3
109,584 + +0.5
109,585 - -0.3
109,585 - +0.3
109,773 + H281DRAFT_05526 0.16 -0.8
109,774 - H281DRAFT_05526 0.17 -0.1
109,774 - H281DRAFT_05526 0.17 +0.2
109,791 - H281DRAFT_05526 0.22 +1.1
109,828 - H281DRAFT_05526 0.32 +0.5
109,859 + H281DRAFT_05526 0.41 -0.0
109,860 - H281DRAFT_05526 0.41 +0.5
110,014 + H281DRAFT_05526 0.86 -0.7
110,062 - -1.0
110,150 + -0.6
110,168 + +0.4
110,181 + -0.0
110,182 - -0.0
110,182 - +1.2
110,306 - +0.2
110,313 + +0.1
110,314 - +0.4
110,344 - +0.1
110,388 + -0.5
110,388 + -1.2
110,388 + +0.1
110,388 + -0.3
110,388 + +2.0
110,388 + -1.1
110,388 + -0.8
110,389 - +1.2
110,785 - H281DRAFT_05527 0.68 -0.4
110,785 - H281DRAFT_05527 0.68 -0.2
110,809 - H281DRAFT_05527 0.72 -1.1
110,814 + H281DRAFT_05527 0.73 -0.3
110,831 - H281DRAFT_05527 0.75 -2.0
110,914 + H281DRAFT_05527 0.88 +0.6
111,022 + +0.9
111,022 + -0.2

Or see this region's nucleotide sequence