Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05524

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05523 and H281DRAFT_05524 are separated by 38 nucleotidesH281DRAFT_05524 and H281DRAFT_05525 are separated by 559 nucleotides H281DRAFT_05523: H281DRAFT_05523 - propionyl-CoA synthetase (EC 6.2.1.17), at 105,645 to 107,591 _05523 H281DRAFT_05524: H281DRAFT_05524 - Amidases related to nicotinamidase, at 107,630 to 108,103 _05524 H281DRAFT_05525: H281DRAFT_05525 - Short-chain dehydrogenases of various substrate specificities, at 108,663 to 109,538 _05525 Position (kb) 107 108 109Strain fitness (log2 ratio) -2 -1 0 1 2at 106.945 kb on + strand, within H281DRAFT_05523at 106.986 kb on - strand, within H281DRAFT_05523at 107.052 kb on + strand, within H281DRAFT_05523at 107.089 kb on - strand, within H281DRAFT_05523at 107.398 kb on + strandat 107.450 kb on - strandat 107.481 kb on - strandat 107.521 kb on + strandat 107.705 kb on + strand, within H281DRAFT_05524at 107.759 kb on - strand, within H281DRAFT_05524at 107.840 kb on + strand, within H281DRAFT_05524at 107.884 kb on + strand, within H281DRAFT_05524at 108.035 kb on + strand, within H281DRAFT_05524at 108.035 kb on + strand, within H281DRAFT_05524at 108.103 kb on + strandat 108.104 kb on - strandat 108.104 kb on - strandat 108.155 kb on + strandat 108.156 kb on - strandat 108.156 kb on - strandat 108.237 kb on + strandat 108.238 kb on - strandat 108.238 kb on - strandat 108.238 kb on - strandat 108.290 kb on - strandat 108.394 kb on - strandat 108.398 kb on - strandat 108.398 kb on - strandat 108.432 kb on + strandat 108.433 kb on - strandat 108.471 kb on + strandat 108.472 kb on - strandat 108.472 kb on - strandat 108.541 kb on + strandat 108.542 kb on - strandat 108.542 kb on - strandat 108.744 kb on + strandat 108.763 kb on + strand, within H281DRAFT_05525at 108.763 kb on + strand, within H281DRAFT_05525at 108.764 kb on - strand, within H281DRAFT_05525at 108.908 kb on + strand, within H281DRAFT_05525at 108.908 kb on + strand, within H281DRAFT_05525at 108.909 kb on - strand, within H281DRAFT_05525at 108.909 kb on - strand, within H281DRAFT_05525at 108.909 kb on - strand, within H281DRAFT_05525at 108.916 kb on + strand, within H281DRAFT_05525at 108.917 kb on - strand, within H281DRAFT_05525at 109.067 kb on + strand, within H281DRAFT_05525at 109.068 kb on - strand, within H281DRAFT_05525at 109.068 kb on - strand, within H281DRAFT_05525at 109.078 kb on + strand, within H281DRAFT_05525at 109.079 kb on - strand, within H281DRAFT_05525

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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106,945 + H281DRAFT_05523 0.67 +0.4
106,986 - H281DRAFT_05523 0.69 +0.8
107,052 + H281DRAFT_05523 0.72 +0.7
107,089 - H281DRAFT_05523 0.74 +1.0
107,398 + +1.3
107,450 - -0.5
107,481 - -0.0
107,521 + +0.2
107,705 + H281DRAFT_05524 0.16 +1.1
107,759 - H281DRAFT_05524 0.27 -2.3
107,840 + H281DRAFT_05524 0.44 +0.3
107,884 + H281DRAFT_05524 0.54 +0.2
108,035 + H281DRAFT_05524 0.85 -0.2
108,035 + H281DRAFT_05524 0.85 -0.1
108,103 + -0.1
108,104 - -1.0
108,104 - -0.3
108,155 + -0.3
108,156 - +2.0
108,156 - +0.3
108,237 + +0.4
108,238 - -0.9
108,238 - +0.4
108,238 - -0.6
108,290 - +0.2
108,394 - -0.4
108,398 - +0.3
108,398 - +0.4
108,432 + +0.2
108,433 - +0.5
108,471 + -0.2
108,472 - -0.2
108,472 - -0.8
108,541 + -0.5
108,542 - -0.3
108,542 - +0.2
108,744 + +0.8
108,763 + H281DRAFT_05525 0.11 -0.5
108,763 + H281DRAFT_05525 0.11 +0.4
108,764 - H281DRAFT_05525 0.12 +0.7
108,908 + H281DRAFT_05525 0.28 +0.7
108,908 + H281DRAFT_05525 0.28 +0.1
108,909 - H281DRAFT_05525 0.28 +0.1
108,909 - H281DRAFT_05525 0.28 +1.0
108,909 - H281DRAFT_05525 0.28 +0.5
108,916 + H281DRAFT_05525 0.29 +0.5
108,917 - H281DRAFT_05525 0.29 +1.0
109,067 + H281DRAFT_05525 0.46 -0.6
109,068 - H281DRAFT_05525 0.46 +0.4
109,068 - H281DRAFT_05525 0.46 +0.1
109,078 + H281DRAFT_05525 0.47 -0.4
109,079 - H281DRAFT_05525 0.47 +0.2

Or see this region's nucleotide sequence