Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02711

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02709 and H281DRAFT_02710 are separated by 211 nucleotidesH281DRAFT_02710 and H281DRAFT_02711 overlap by 26 nucleotidesH281DRAFT_02711 and H281DRAFT_02712 are separated by 29 nucleotides H281DRAFT_02709: H281DRAFT_02709 - GntR family transcriptional regulator, at 292,797 to 293,645 _02709 H281DRAFT_02710: H281DRAFT_02710 - transcriptional regulator, Crp/Fnr family, at 293,857 to 294,615 _02710 H281DRAFT_02711: H281DRAFT_02711 - Hydantoin racemase, at 294,590 to 295,246 _02711 H281DRAFT_02712: H281DRAFT_02712 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 295,276 to 296,793 _02712 Position (kb) 294 295 296Strain fitness (log2 ratio) -1 0 1at 293.804 kb on - strandat 293.844 kb on + strandat 293.968 kb on + strandat 293.998 kb on + strand, within H281DRAFT_02710at 293.999 kb on - strandat 294.121 kb on + strand, within H281DRAFT_02710at 294.163 kb on + strand, within H281DRAFT_02710at 294.163 kb on + strand, within H281DRAFT_02710at 294.163 kb on + strand, within H281DRAFT_02710at 294.163 kb on + strand, within H281DRAFT_02710at 294.267 kb on - strand, within H281DRAFT_02710at 294.314 kb on + strand, within H281DRAFT_02710at 294.314 kb on + strand, within H281DRAFT_02710at 294.315 kb on - strand, within H281DRAFT_02710at 294.315 kb on - strand, within H281DRAFT_02710at 294.533 kb on - strand, within H281DRAFT_02710at 295.071 kb on + strand, within H281DRAFT_02711at 295.071 kb on + strand, within H281DRAFT_02711at 295.071 kb on + strand, within H281DRAFT_02711at 295.071 kb on + strand, within H281DRAFT_02711at 295.072 kb on - strand, within H281DRAFT_02711at 295.072 kb on - strand, within H281DRAFT_02711at 295.072 kb on - strand, within H281DRAFT_02711at 295.072 kb on - strand, within H281DRAFT_02711at 295.075 kb on + strand, within H281DRAFT_02711at 295.077 kb on + strand, within H281DRAFT_02711at 295.078 kb on - strand, within H281DRAFT_02711at 295.078 kb on - strand, within H281DRAFT_02711at 295.150 kb on + strand, within H281DRAFT_02711at 295.150 kb on + strand, within H281DRAFT_02711at 295.226 kb on + strandat 295.226 kb on + strandat 295.226 kb on + strandat 295.227 kb on - strandat 295.227 kb on - strandat 295.246 kb on + strandat 295.475 kb on - strand, within H281DRAFT_02712at 295.679 kb on + strand, within H281DRAFT_02712at 295.679 kb on + strand, within H281DRAFT_02712at 295.695 kb on + strand, within H281DRAFT_02712at 295.696 kb on - strand, within H281DRAFT_02712at 295.769 kb on - strand, within H281DRAFT_02712at 295.822 kb on + strand, within H281DRAFT_02712at 295.913 kb on - strand, within H281DRAFT_02712at 295.939 kb on + strand, within H281DRAFT_02712at 295.940 kb on - strand, within H281DRAFT_02712at 295.941 kb on + strand, within H281DRAFT_02712at 295.941 kb on + strand, within H281DRAFT_02712at 295.942 kb on - strand, within H281DRAFT_02712at 296.187 kb on + strand, within H281DRAFT_02712at 296.188 kb on - strand, within H281DRAFT_02712

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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293,804 - +0.1
293,844 + -0.3
293,968 + +0.9
293,998 + H281DRAFT_02710 0.19 -0.4
293,999 - -1.1
294,121 + H281DRAFT_02710 0.35 +0.0
294,163 + H281DRAFT_02710 0.40 -0.1
294,163 + H281DRAFT_02710 0.40 +0.4
294,163 + H281DRAFT_02710 0.40 -0.0
294,163 + H281DRAFT_02710 0.40 +0.8
294,267 - H281DRAFT_02710 0.54 -0.4
294,314 + H281DRAFT_02710 0.60 -0.1
294,314 + H281DRAFT_02710 0.60 -0.2
294,315 - H281DRAFT_02710 0.60 -0.0
294,315 - H281DRAFT_02710 0.60 -0.3
294,533 - H281DRAFT_02710 0.89 +0.4
295,071 + H281DRAFT_02711 0.73 +0.1
295,071 + H281DRAFT_02711 0.73 +0.4
295,071 + H281DRAFT_02711 0.73 +0.5
295,071 + H281DRAFT_02711 0.73 -0.2
295,072 - H281DRAFT_02711 0.73 +0.2
295,072 - H281DRAFT_02711 0.73 +0.6
295,072 - H281DRAFT_02711 0.73 +0.0
295,072 - H281DRAFT_02711 0.73 -0.5
295,075 + H281DRAFT_02711 0.74 +0.3
295,077 + H281DRAFT_02711 0.74 +0.6
295,078 - H281DRAFT_02711 0.74 +0.3
295,078 - H281DRAFT_02711 0.74 -0.3
295,150 + H281DRAFT_02711 0.85 +0.5
295,150 + H281DRAFT_02711 0.85 +0.9
295,226 + -1.1
295,226 + -0.1
295,226 + +0.2
295,227 - -0.3
295,227 - +0.3
295,246 + +0.5
295,475 - H281DRAFT_02712 0.13 -0.5
295,679 + H281DRAFT_02712 0.27 +0.1
295,679 + H281DRAFT_02712 0.27 +0.1
295,695 + H281DRAFT_02712 0.28 +0.0
295,696 - H281DRAFT_02712 0.28 +0.8
295,769 - H281DRAFT_02712 0.32 +0.3
295,822 + H281DRAFT_02712 0.36 -0.8
295,913 - H281DRAFT_02712 0.42 -1.0
295,939 + H281DRAFT_02712 0.44 +0.3
295,940 - H281DRAFT_02712 0.44 -0.1
295,941 + H281DRAFT_02712 0.44 -0.8
295,941 + H281DRAFT_02712 0.44 -0.3
295,942 - H281DRAFT_02712 0.44 +0.3
296,187 + H281DRAFT_02712 0.60 -0.0
296,188 - H281DRAFT_02712 0.60 +0.1

Or see this region's nucleotide sequence