Experiment: Varel_Bryant_medium_Glucose with Lincomycin 0.0015625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0402 and BT0403 are separated by 7 nucleotides BT0403 and BT0404 are separated by 258 nucleotides BT0404 and BT0405 are separated by 153 nucleotides BT0405 and BT0406 are separated by 23 nucleotides BT0406 and BT0407 are separated by 8 nucleotides
BT0402: BT0402 - hypothetical protein (NCBI ptt file), at 490,334 to 490,843
BT0402
BT0403: BT0403 - hypothetical protein (NCBI ptt file), at 490,851 to 491,348
BT0403
BT0404: BT0404 - hypothetical protein (NCBI ptt file), at 491,607 to 493,934
BT0404
BT0405: BT0405 - hypothetical protein (NCBI ptt file), at 494,088 to 494,447
BT0405
BT0406: BT0406 - hypothetical protein (NCBI ptt file), at 494,471 to 494,728
BT0406
BT0407: BT0407 - hypothetical protein (NCBI ptt file), at 494,737 to 495,096
BT0407
Position (kb) 491
492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 490.614 kb on - strand, within BT0402 at 490.667 kb on - strand, within BT0402 at 490.667 kb on - strand, within BT0402 at 490.714 kb on - strand, within BT0402 at 490.968 kb on - strand, within BT0403 at 490.968 kb on - strand, within BT0403 at 490.970 kb on - strand, within BT0403 at 491.386 kb on + strand at 491.413 kb on + strand at 491.598 kb on - strand at 491.604 kb on - strand at 491.638 kb on - strand at 491.638 kb on - strand at 491.774 kb on + strand at 491.829 kb on + strand at 491.838 kb on - strand at 491.838 kb on - strand at 491.896 kb on + strand, within BT0404 at 491.977 kb on + strand, within BT0404 at 492.059 kb on - strand, within BT0404 at 492.168 kb on - strand, within BT0404 at 492.168 kb on - strand, within BT0404 at 492.214 kb on + strand, within BT0404 at 492.319 kb on + strand, within BT0404 at 492.426 kb on - strand, within BT0404 at 492.506 kb on - strand, within BT0404 at 492.617 kb on - strand, within BT0404 at 492.628 kb on + strand, within BT0404 at 492.761 kb on - strand, within BT0404 at 492.869 kb on + strand, within BT0404 at 492.895 kb on + strand, within BT0404 at 492.993 kb on - strand, within BT0404 at 492.995 kb on - strand, within BT0404 at 493.020 kb on - strand, within BT0404 at 493.439 kb on - strand, within BT0404 at 493.498 kb on + strand, within BT0404 at 493.555 kb on + strand, within BT0404 at 493.556 kb on - strand, within BT0404 at 493.844 kb on + strand at 493.959 kb on - strand at 494.048 kb on - strand at 494.129 kb on + strand, within BT0405 at 494.196 kb on - strand, within BT0405 at 494.335 kb on + strand, within BT0405 at 494.356 kb on + strand, within BT0405 at 494.472 kb on + strand at 494.472 kb on + strand at 494.696 kb on + strand, within BT0406 at 494.729 kb on - strand at 494.739 kb on - strand at 494.826 kb on + strand, within BT0407
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Lincomycin 0.0015625 mM remove 490,614 - BT0402 0.55 -1.6 490,667 - BT0402 0.65 -0.0 490,667 - BT0402 0.65 -0.0 490,714 - BT0402 0.75 -0.8 490,968 - BT0403 0.23 +0.8 490,968 - BT0403 0.23 -1.6 490,970 - BT0403 0.24 -0.0 491,386 + -2.0 491,413 + +0.4 491,598 - +0.6 491,604 - -0.0 491,638 - -0.5 491,638 - -3.0 491,774 + -2.3 491,829 + -2.6 491,838 - -1.9 491,838 - -1.0 491,896 + BT0404 0.12 -1.7 491,977 + BT0404 0.16 -1.0 492,059 - BT0404 0.19 -0.0 492,168 - BT0404 0.24 -1.8 492,168 - BT0404 0.24 -1.8 492,214 + BT0404 0.26 -0.4 492,319 + BT0404 0.31 -0.0 492,426 - BT0404 0.35 -3.7 492,506 - BT0404 0.39 -0.0 492,617 - BT0404 0.43 -1.2 492,628 + BT0404 0.44 -0.0 492,761 - BT0404 0.50 -0.0 492,869 + BT0404 0.54 +1.3 492,895 + BT0404 0.55 -2.3 492,993 - BT0404 0.60 -1.6 492,995 - BT0404 0.60 -2.3 493,020 - BT0404 0.61 -1.5 493,439 - BT0404 0.79 -1.0 493,498 + BT0404 0.81 -2.0 493,555 + BT0404 0.84 -2.3 493,556 - BT0404 0.84 -0.0 493,844 + +1.0 493,959 - -1.0 494,048 - -0.0 494,129 + BT0405 0.11 -2.3 494,196 - BT0405 0.30 -0.0 494,335 + BT0405 0.69 -1.3 494,356 + BT0405 0.74 -0.3 494,472 + -0.4 494,472 + -1.0 494,696 + BT0406 0.87 -1.2 494,729 - -1.0 494,739 - -3.5 494,826 + BT0407 0.25 -0.0
Or see this region's nucleotide sequence