Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05901

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05900 and H281DRAFT_05901 are separated by 29 nucleotidesH281DRAFT_05901 and H281DRAFT_05902 are separated by 151 nucleotides H281DRAFT_05900: H281DRAFT_05900 - HD-GYP domain, at 36,414 to 37,904 _05900 H281DRAFT_05901: H281DRAFT_05901 - Cupin domain-containing protein, at 37,934 to 38,275 _05901 H281DRAFT_05902: H281DRAFT_05902 - 2-Methylisocitrate lyase, PEP mutase family, at 38,427 to 39,275 _05902 Position (kb) 37 38 39Strain fitness (log2 ratio) -1 0 1at 36.963 kb on + strand, within H281DRAFT_05900at 36.964 kb on - strand, within H281DRAFT_05900at 37.522 kb on + strand, within H281DRAFT_05900at 37.523 kb on - strand, within H281DRAFT_05900at 37.523 kb on - strand, within H281DRAFT_05900at 37.993 kb on - strand, within H281DRAFT_05901at 37.993 kb on - strandat 38.123 kb on + strand, within H281DRAFT_05901at 38.123 kb on + strand, within H281DRAFT_05901at 38.530 kb on - strand, within H281DRAFT_05902

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
36,963 + H281DRAFT_05900 0.37 -0.8
36,964 - H281DRAFT_05900 0.37 -0.3
37,522 + H281DRAFT_05900 0.74 +0.2
37,523 - H281DRAFT_05900 0.74 -0.9
37,523 - H281DRAFT_05900 0.74 +0.2
37,993 - H281DRAFT_05901 0.17 -0.3
37,993 - -1.4
38,123 + H281DRAFT_05901 0.55 -0.1
38,123 + H281DRAFT_05901 0.55 +0.0
38,530 - H281DRAFT_05902 0.12 +0.6

Or see this region's nucleotide sequence